Metamenu

Genomes encoding eukaryotic-like proteins

PF00440 Bacterial regulatory proteins, tetR family

Copy number in non-pathogens:
Mean=30.01 Stddev=39.52

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia africana NBRC 100379 s 4 200
Nocardia anaemiae NBRC 100462 s 4 222
Nocardia yamanashiensis NBRC 100130 s 5 241
Nocardia elegans NBRC 108235 s 4 201
Nocardia mexicana NBRC 108244 s 6 270
Nocardia arthritidis NBRC 100137 s 4 193
Nocardia crassostreae s 4 205
Nocardia inohanensis NBRC 100128 s 4 210
Nocardia kruczakiae NBRC 101016 s 4 204
Nocardia mikamii NBRC 108933 s 4 207
Nocardia niwae NBRC 108934 = DSM 45340 s 4 207
Nocardia vaccinii NBRC 15922 s 5 250
Nocardia vermiculata NBRC 100427 s 4 211
Nocardia asiatica NBRC 100129 s 4 201
Nocardia niigatensis NBRC 100131 s 5 231
Nocardia araoensis NBRC 100135 s 4 205
Nocardia pneumoniae NBRC 100136 s 4 193
Nocardia abscessus NBRC 100374 s 5 238
Nocardia aobensis NBRC 100429 s 4 215
Nocardia concava NBRC 100430 s 5 240
Nocardia exalbida NBRC 100660 s 4 194
Nocardia tenerifensis NBRC 101015 s 5 239
Nocardia transvalensis NBRC 15921 s 5 255
Mycobacterium mageritense DSM 44476 = CIP 104973 s 4 194
Mycobacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 s 4 194
Mycobacterium peregrinum s 4 217
Kutzneria sp. 744 s 4 191
Amycolatopsis orientalis DSM 46075 s 4 224
Frankia sp. CN3 s 4 201
Mycobacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 s 4 189
Nocardia brasiliensis ATCC 700358 p 5 256
Actinomadura madurae LIID-AJ290 s 4 202
Nocardia nova SH22a s 5 257
Amycolatopsis jejuensis s 4 210
Pseudonocardia acaciae DSM 45401 s 5 253
Mycobacterium wolinskyi s 4 194
Mycobacterium florentinum s 4 194
Mycobacterium peregrinum s 4 217
Mycobacterium wolinskyi s 4 195
Mycobacterium peregrinum s 4 205
Mycobacterium peregrinum s 4 207
Mycobacterium peregrinum s 4 197
Mycobacterium porcinum s 4 226
Mycobacterium porcinum s 4 224
Mycobacterium porcinum s 4 191
Amycolatopsis kentuckyensis s 4 223
Amycolatopsis lexingtonensis s 5 239
Amycolatopsis pretoriensis s 4 218
Mycobacterium peregrinum s 4 205

*p=pathogen;s=symbiont