Genomes encoding eukaryotic-like proteins

PF04679 ATP dependent DNA ligase C terminal region

Copy number in non-pathogens:
Mean=1.03 Stddev=1.40

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia africana NBRC 100379 s 4 7
Bradyrhizobium japonicum USDA 6 s 4 7
Sinorhizobium meliloti Rm41 s 6 10
Mesorhizobium plurifarium s 5 9
Rhizobium favelukesii s 4 8
Rhizobium sullae s 4 7
Bradyrhizobium sp. s 4 7
Rhizobium leguminosarum bv. trifolii WSM1325 s 4 7
Rhizobium giardinii bv. giardinii H152 s 4 7
Bradyrhizobium sp. WSM2793 s 4 8
Ensifer sp. BR816 s 4 7
Rhizobium leguminosarum bv. trifolii SRDI943 s 6 10
Bradyrhizobium sp. WSM471 s 4 8
Bradyrhizobium sp. WSM1253 s 5 9
Mesorhizobium sp. L103C119B0 s 4 7
Sinorhizobium meliloti 4H41 s 4 8
Rhizobium favelukesii s 4 8
Sinorhizobium meliloti CIAM1775 s 5 9
Rhizobium mesoamericanum STM6155 s 4 7
Sinorhizobium meliloti AK58 s 5 9
Bradyrhizobium japonicum USDA 38 s 5 9
Sinorhizobium medicae WSM244 s 4 7
Sinorhizobium meliloti MVII-I s 4 7
Bradyrhizobium japonicum USDA 6 s 4 7
Bradyrhizobium sp. WSM4349 s 4 7
Bradyrhizobium japonicum USDA 123 s 4 8
Bradyrhizobium elkanii WSM2783 s 4 8
Bradyrhizobium sp. USDA 3384 s 4 8
Sinorhizobium meliloti RRl128 s 4 8
Sinorhizobium meliloti CCNWSX0020 s 7 11
Sinorhizobium meliloti A0641M s 4 7
Sinorhizobium meliloti 1A42 s 4 7
Sinorhizobium meliloti AK11 s 4 7
Sinorhizobium meliloti AE608H s 5 9
Sinorhizobium meliloti A0643DD s 4 7
Agrobacterium tumefaciens WRT31 s 4 7
Bradyrhizobium elkanii USDA 94 s 4 8
Ensifer aridi s 4 8
Mesorhizobium sp. WSM2561 s 4 8
Sinorhizobium meliloti GR4 s 4 8
Bradyrhizobium japonicum s 4 7
Sinorhizobium sp. PC2 s 5 9
Sinorhizobium meliloti s 5 9
Bradyrhizobium japonicum s 4 7
Sinorhizobium meliloti s 5 9
Rhizobium phaseoli s 4 8
Rhizobium phaseoli s 4 8
Rhizobium phaseoli s 4 7
Ensifer aridi s 6 10
Ensifer aridi s 4 7
Ensifer aridi s 4 7
Ensifer shofinae s 4 8
Bradyrhizobium japonicum s 4 7
Bradyrhizobium canariense s 5 9
Bradyrhizobium canariense s 5 9
Bradyrhizobium canariense s 6 10
Bradyrhizobium canariense s 6 10
Bradyrhizobium canariense s 6 10
Bradyrhizobium canariense s 5 9
Bradyrhizobium japonicum s 7 12
Bradyrhizobium canariense s 6 10
Bradyrhizobium canariense s 4 7
Sinorhizobium meliloti s 4 7
Sinorhizobium meliloti s 4 8
Sinorhizobium meliloti s 4 8
Sinorhizobium meliloti s 4 7
Sinorhizobium meliloti s 6 10
Sinorhizobium meliloti s 4 7
Sinorhizobium meliloti s 6 10
Sinorhizobium meliloti s 4 8
Sinorhizobium meliloti s 5 9
Sinorhizobium meliloti 1021 s 4 8
Sinorhizobium fredii NGR234 s 4 8

*p=pathogen;s=symbiont