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Genomes encoding eukaryotic-like proteins

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PF14240 YHYH protein

Copy number in non-pathogens:
Mean=0.08 Stddev=0.47

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paraglaciecola mesophila KMM 241 s 10 5
Flavobacterium branchiophilum FL-15 s 4 2
Zobellia galactanivorans s 10 5
Chthoniobacter flavus Ellin428 s 4 2
Cellulophaga algicola DSM 14237 s 6 3
Cellulophaga baltica NN016038 s 10 5
Rivularia sp. PCC 7116 s 4 2
Pseudoalteromonas luteoviolacea S4054 s 4 2
Pseudoalteromonas sp. TB25 s 6 3
Pseudoalteromonas sp. AC163 s 6 3
Pseudoalteromonas sp. TB13 s 6 3
Cyclobacterium marinum DSM 745 s 14 7
Saprospira grandis DSM 2844 s 8 4
Pseudoalteromonas sp. NW 4327 s 4 2
Leucothrix mucor DSM 2157 s 6 3
Microbulbifer variabilis ATCC 700307 s 8 4
Kiloniella laminariae DSM 19542 s 4 2
Echinicola pacifica DSM 19836 s 6 3
Vibrio tubiashii NCIMB 1337 = ATCC 19106 p 4 2
Gillisia sp. CAL575 s 4 2
Acaryochloris marina MBIC11017 s 4 2
Pseudoalteromonas fuliginea s 6 3
Arenibacter algicola s 4 2
Flavobacterium succinicans s 4 2
Vibrio tubiashii ATCC 19109 s 4 2
Vibrio tubiashii ATCC 19109 s 4 2
Colwellia psychrerythraea s 8 4
Cobetia amphilecti s 6 3
Thalassomonas viridans s 6 3
Polaribacter reichenbachii s 6 3
Cellulophaga fucicola s 4 2
Polaribacter reichenbachii s 6 3
Zobellia galactanivorans s 8 4

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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