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Genomes encoding eukaryotic-like proteins

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PF16187 Middle or third domain of peptidase_M16

Copy number in non-pathogens:
Mean=0.11 Stddev=0.36

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Cronobacter malonaticus 681 s 5 2
Pseudoalteromonas tunicata D2 s 8 3
Plesiomonas shigelloides 302-73 s 5 2
Pseudoalteromonas luteoviolacea 2ta16 s 5 2
Pseudoalteromonas luteoviolacea S4054 s 5 2
Pseudoalteromonas sp. TB25 s 5 2
Pseudoalteromonas sp. AC163 s 5 2
Pseudoalteromonas sp. TB13 s 5 2
Pseudoalteromonas sp. TB41 s 5 2
Salmonella enterica subsp. enterica serovar Tennessee s 5 2
Pseudoalteromonas sp. NW 4327 s 5 2
Pseudoalteromonas sp. NJ631 s 5 2
Pseudoalteromonas flavipulchra JG1 s 8 3
Cellvibrio sp. BR s 5 2
Pseudoalteromonas fuliginea s 5 2
Plesiomonas sp. ZOR0011 s 5 2
Thalassomonas viridans s 8 3
Salmonella enterica s 5 2
Endozoicomonas arenosclerae s 5 2
Pseudoalteromonas tetraodonis s 5 2
Pseudoalteromonas lipolytica s 5 2
Colwellia sp. MT41 s 5 2
Pseudoalteromonas lipolytica s 5 2
Enterobacter cloacae s 5 2
Pseudoalteromonas tetraodonis s 5 2
Pseudoalteromonas lipolytica s 5 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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