Effective results for Streptococcus mitis bv. 2 str. SK95 (eggnog40)
Summary
Number of putative secreted proteins: 101
- Predicted by T4SEpre: 102
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 19 proteins (1 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
1000588.HMPREF9965_1141 | + | ER | |||
1000588.HMPREF9965_1343 | + | ER | |||
1000588.HMPREF9965_1342 | + | ER | |||
1000588.HMPREF9965_1341 | + | ER | |||
1000588.HMPREF9965_0106 | (PF00344) | mitochondrial | |||
1000588.HMPREF9965_1545 | + | mitochondrial | |||
1000588.HMPREF9965_0178 | + | ER | |||
1000588.HMPREF9965_1984 | (PF03644) | (mitochondrial) | |||
1000588.HMPREF9965_0599 | + | ER | |||
1000588.HMPREF9965_0908 | + | (mitochondrial); (plastid) | |||
1000588.HMPREF9965_1622 | + | ER | |||
1000588.HMPREF9965_0578 | PF02916 | ER | |||
1000588.HMPREF9965_0026 | + | (mitochondrial) | |||
1000588.HMPREF9965_0212 | + | (mitochondrial) | |||
1000588.HMPREF9965_0745 | + | ER | |||
1000588.HMPREF9965_1157 | + | ER | |||
1000588.HMPREF9965_0239 | + | ER | |||
1000588.HMPREF9965_1489 | (PF03596) | ER | |||
1000588.HMPREF9965_1058 | + | (mitochondrial) | |||
1000588.HMPREF9965_0983 | + | ER | |||
1000588.HMPREF9965_1582 | (PF04991) | (ER) | |||
1000588.HMPREF9965_0278 | (PF05257) | ER | |||
1000588.HMPREF9965_0182 | + | ER | |||
1000588.HMPREF9965_0868 | + | ER | |||
1000588.HMPREF9965_0882 | + | ER | |||
1000588.HMPREF9965_1055 | + | ER | |||
1000588.HMPREF9965_0501 | (PF05257) | ER | |||
1000588.HMPREF9965_1274 | (PF14311) | ER | |||
1000588.HMPREF9965_0252 | + | ER | |||
1000588.HMPREF9965_1863 | (PF00344) | mitochondrial | |||
1000588.HMPREF9965_0317 | + | ER | |||
1000588.HMPREF9965_1892 | (PF03083) | ER | |||
1000588.HMPREF9965_0453 | + | (mitochondrial) | |||
1000588.HMPREF9965_0306 | + | mitochondrial; (mitochondrial) | |||
1000588.HMPREF9965_0936 | + | ER | |||
1000588.HMPREF9965_0203 | (PF09683) | ER | |||
1000588.HMPREF9965_0680 | + | mitochondrial | |||
1000588.HMPREF9965_0433 | + | (mitochondrial) | |||
1000588.HMPREF9965_0264 | + | (PF05257) | |||
1000588.HMPREF9965_2052 | + | not used | |||
1000588.HMPREF9965_1504 | + | ||||
1000588.HMPREF9965_1508 | + | ||||
1000588.HMPREF9965_0692 | + | ||||
1000588.HMPREF9965_0107 | + | ||||
1000588.HMPREF9965_0102 | + | ||||
1000588.HMPREF9965_1541 | + | ||||
1000588.HMPREF9965_0144 | + | ||||
1000588.HMPREF9965_0001 | + | ||||
1000588.HMPREF9965_0516 | + | ||||
1000588.HMPREF9965_1844 | + | ||||
1000588.HMPREF9965_1364 | (PF01633) | ||||
1000588.HMPREF9965_1579 | (PF04991) | ||||
1000588.HMPREF9965_0970 | + | ||||
1000588.HMPREF9965_1371 | + | ||||
1000588.HMPREF9965_0157 | (PF03083) | ||||
1000588.HMPREF9965_2022 | + | not used | |||
1000588.HMPREF9965_1761 | + | ||||
1000588.HMPREF9965_1815 | (PF01633) | ||||
1000588.HMPREF9965_1810 | + | ||||
1000588.HMPREF9965_0631 | + | ||||
1000588.HMPREF9965_0039 | + | ||||
1000588.HMPREF9965_0740 | + | ||||
1000588.HMPREF9965_1776 | + | ||||
1000588.HMPREF9965_1771 | + | ||||
1000588.HMPREF9965_0602 | + | ||||
1000588.HMPREF9965_0730 | + | ||||
1000588.HMPREF9965_1948 | + | ||||
1000588.HMPREF9965_1496 | + | ||||
1000588.HMPREF9965_0618 | + | ||||
1000588.HMPREF9965_0724 | + | ||||
1000588.HMPREF9965_1551 | (PF05257) | ||||
1000588.HMPREF9965_1951 | + | ||||
1000588.HMPREF9965_2026 | (PF03596) | ||||
1000588.HMPREF9965_1719 | + | ||||
1000588.HMPREF9965_0283 | + | ||||
1000588.HMPREF9965_0067 | + | ||||
1000588.HMPREF9965_1927 | + | ||||
1000588.HMPREF9965_2036 | + | ||||
1000588.HMPREF9965_1724 | + | ||||
1000588.HMPREF9965_1580 | (PF04991) | ||||
1000588.HMPREF9965_1851 | + | not used | |||
1000588.HMPREF9965_0855 | + | ||||
1000588.HMPREF9965_0276 | + | ||||
1000588.HMPREF9965_0887 | + | ||||
1000588.HMPREF9965_0643 | + | ||||
1000588.HMPREF9965_1856 | + | ||||
1000588.HMPREF9965_1852 | + | ||||
1000588.HMPREF9965_0258 | + | ||||
1000588.HMPREF9965_2062 | + | ||||
1000588.HMPREF9965_0403 | + | ||||
1000588.HMPREF9965_0798 | + | ||||
1000588.HMPREF9965_0139 | + | ||||
1000588.HMPREF9965_1066 | + | ||||
1000588.HMPREF9965_1671 | + | ||||
1000588.HMPREF9965_0304 | + | ||||
1000588.HMPREF9965_1538 | + | ||||
1000588.HMPREF9965_1668 | + | ||||
1000588.HMPREF9965_1400 | + | ||||
1000588.HMPREF9965_1401 | + | ||||
1000588.HMPREF9965_1085 | + | ||||
1000588.HMPREF9965_1240 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0 (0/0 KEGG proteins)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0 (0/0 KEGG proteins)