EffectiveDB is now using EggNOG 5 taxonomy-level 2 orthologous groups for prediction of secretion systems. Please consider those changes if you like to provide your own "genotype" files. Unfortunately there was an issue in the "genome mode" of EffectiveDB which ...
A new version 5.2 of EffectiveELD has been finished. It is based on Pfam 31.0 (within Interpro 5.25-64.0). The genome repository was created from the bacterial NCBI RefSeq as of July 2017 and by using the genome metadata from the ...
A new version 5.1 of EffectiveELD has been finished. It is based on Pfam 29.0 (within Interpro 5.18-57.0). The genome repository was created from the bacterial NCBI RefSeq as of June 2016 and by using the genome metadata from the ...
The eukaryotic-like domains of our EffectiveELD method have been updated. The new release 5.0 is based on an updated genome repository including all bacterial genomes from the RefSeq database.
Protein domains have been annotated using Interproscan 53.0 based ...
A new prediction model for EffectiveT3 has been implemented. The new model 2.0 achieves better performance than the previous model 1.0 and is now available for job submission and for download.
EffectiveDB is now hosted in a new website. It is based on the Drupal framework and gives user-friendly access to the contents of the Effective database, allows the submission of compute jobs and provides documentation and supplementary data for ...
