Effective results for Achromobacter insuavis AXX-A (eggnog40)
Summary
Number of putative secreted proteins: 341
- Predicted by T4SEpre: 63
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 284 proteins (5 high, 279 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 1003200.AXXA_28560 | (PF00126) (PF03466) | mitochondrial | |||
| 1003200.AXXA_27310 | (PF00126) (PF03466) | mitochondrial; (mitochondrial) | |||
| 1003200.AXXA_26955 | (PF00126) (PF03466) | ER | |||
| 1003200.AXXA_05923 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_28830 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_03889 | (PF00126) (PF03466) | ER | |||
| 1003200.AXXA_14014 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_07405 | (PF00126) (PF03466) | ER | |||
| 1003200.AXXA_08214 | (PF00126) (PF03466) | mitochondrial; (mitochondrial) | |||
| 1003200.AXXA_02365 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_20626 | (PF00126) (PF03466) | mitochondrial; (plastid) | |||
| 1003200.AXXA_21363 | (PF00126) (PF03466) | (ER); ER | |||
| 1003200.AXXA_11600 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_24065 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_05798 | (PF00126) (PF03466) | mitochondrial | |||
| 1003200.AXXA_07590 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_13254 | (PF00126) (PF03466) | mitochondrial | |||
| 1003200.AXXA_04898 | (PF00126) (PF03466) | ER | |||
| 1003200.AXXA_26090 | (PF00126) (PF03466) | ER; (ER) | |||
| 1003200.AXXA_06003 | (PF00126) (PF03466) | mitochondrial | |||
| 1003200.AXXA_05128 | (PF00126) (PF03466) | (ER); ER | |||
| 1003200.AXXA_02477 | (PF00126) (PF03466) | (mitochondrial); (plastid) | |||
| 1003200.AXXA_27695 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_29380 | (PF00126) (PF03466) | (mitochondrial); (plastid) | |||
| 1003200.AXXA_22005 | (PF00126) (PF03466) | mitochondrial | |||
| 1003200.AXXA_16901 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_13994 | (PF00126) (PF03466) | mitochondrial; (mitochondrial) | |||
| 1003200.AXXA_20778 | (PF00126) (PF03466) | mitochondrial | |||
| 1003200.AXXA_07325 | (PF00126) (PF03466) | ER; (ER) | |||
| 1003200.AXXA_25120 | (PF00126) (PF03466) | (mitochondrial); (ER) | |||
| 1003200.AXXA_15412 | (PF00126) (PF03466) | ER | |||
| 1003200.AXXA_26410 | (PF00126) (PF03466) | (mitochondrial); (ER) | |||
| 1003200.AXXA_18532 | (PF00126) (PF03466) | mitochondrial; (mitochondrial) | |||
| 1003200.AXXA_30822 | (PF00126) (PF03466) | mitochondrial | |||
| 1003200.AXXA_00295 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_05918 | (PF00126) (PF03466) | mitochondrial | |||
| 1003200.AXXA_28305 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_24745 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_06118 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_27705 | (PF00126) (PF03466) | ER | |||
| 1003200.AXXA_07063 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_21613 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_30922 | (PF00126) (PF03466) | (mitochondrial); plastid | |||
| 1003200.AXXA_06993 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_30347 | (PF00126) (PF03466) | mitochondrial; (mitochondrial) | |||
| 1003200.AXXA_25545 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_05843 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_25895 | (PF00126) (PF03466) | mitochondrial; (mitochondrial) | |||
| 1003200.AXXA_26935 | (PF00126) (PF03466) | (mitochondrial); (plastid) | |||
| 1003200.AXXA_02188 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_01793 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_23655 | + | ER | |||
| 1003200.AXXA_22070 | (PF00126) (PF03466) | plastid | |||
| 1003200.AXXA_17491 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_07780 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_24140 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_30087 | (PF07678) | ER | |||
| 1003200.AXXA_28875 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_24730 | (PF00126) (PF03466) | (plastid) | |||
| 1003200.AXXA_27735 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_02340 | + | ER | |||
| 1003200.AXXA_24505 | + | ER | |||
| 1003200.AXXA_15297 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_27770 | (PF09825) | ER | |||
| 1003200.AXXA_09333 | + | ER | |||
| 1003200.AXXA_08888 | (PF12399) | ER | |||
| 1003200.AXXA_30167 | + | mitochondrial; (mitochondrial) | |||
| 1003200.AXXA_25370 | (PF00126) (PF03466) | (plastid) | |||
| 1003200.AXXA_18411 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_09163 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_03189 | + | ER | |||
| 1003200.AXXA_22650 | + | ER | |||
| 1003200.AXXA_03239 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_15517 | (PF12399) | ER | |||
| 1003200.AXXA_26520 | + | (mitochondrial) | |||
| 1003200.AXXA_05483 | + | ER | |||
| 1003200.AXXA_16132 | (PF00701) | ER; (ER) | |||
| 1003200.AXXA_24935 | (PF00126) (PF03466) | (plastid) | |||
| 1003200.AXXA_12942 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_17166 | (PF12399) | ER | |||
| 1003200.AXXA_04833 | + | ER | |||
| 1003200.AXXA_12732 | (PF00126) (PF03466) | plastid | |||
| 1003200.AXXA_29250 | PF10712 | (mitochondrial) | |||
| 1003200.AXXA_11386 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_30037 | (PF12399) | (mitochondrial) | |||
| 1003200.AXXA_01743 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_02907 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_20581 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_29982 | (PF00126) (PF03466) | (plastid) | |||
| 1003200.AXXA_24115 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_00935 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_13544 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_27725 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_08873 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_21588 | (PF00126) (PF03466) | (plastid) | |||
| 1003200.AXXA_05998 | (PF04199) | ER | |||
| 1003200.AXXA_06268 | PF06597 | (ER) | |||
| 1003200.AXXA_26160 | + | mitochondrial | |||
| 1003200.AXXA_16047 | PF10712 | ER | |||
| 1003200.AXXA_25010 | + | ER | |||
| 1003200.AXXA_26165 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_27560 | + | ER | |||
| 1003200.AXXA_20803 | (PF00126) (PF03466) | plastid | |||
| 1003200.AXXA_04413 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_11460 | + | mitochondrial | |||
| 1003200.AXXA_18462 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_05138 | + | ER | |||
| 1003200.AXXA_13229 | + | mitochondrial | |||
| 1003200.AXXA_12340 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_30192 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_21523 | + | ER | |||
| 1003200.AXXA_27390 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_25890 | + | (ER); (mitochondrial) | |||
| 1003200.AXXA_03619 | (PF00126) (PF03466) | (plastid) | |||
| 1003200.AXXA_11171 | + | ER | |||
| 1003200.AXXA_00855 | (PF12399) | ER | |||
| 1003200.AXXA_27350 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_24450 | + | ER; (plastid) | |||
| 1003200.AXXA_30007 | (PF00126) (PF03466) | (ER) | |||
| 1003200.AXXA_10645 | (PF00126) (PF03466) | (mitochondrial) | |||
| 1003200.AXXA_08084 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_04688 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_14398 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_02098 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_21793 | (PF07364) (PF07171) | ||||
| 1003200.AXXA_00465 | (PF00342) | (plastid) | |||
| 1003200.AXXA_24305 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_15197 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_27415 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_11890 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_23115 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_06763 | (PF07364) (PF07171) | ||||
| 1003200.AXXA_08613 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_18106 | + | (mitochondrial) | |||
| 1003200.AXXA_23775 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28480 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_23150 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_16417 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_22140 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28295 | (PF04775) (PF08840) | ||||
| 1003200.AXXA_07894 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_00905 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_17506 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_21623 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_08279 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_25455 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_11590 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_06183 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_14893 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28185 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_12642 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_26115 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_27575 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_01683 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_05163 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_14543 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_23795 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_07914 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_30972 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28210 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_20793 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28680 | (PF04775) (PF08840) | ||||
| 1003200.AXXA_07735 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_24910 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_18457 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_02457 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_27870 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_02847 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_04873 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28425 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_04658 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28730 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_08923 | + | (PF12399) | |||
| 1003200.AXXA_26385 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_21573 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_07108 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_27835 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_12450 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_01410 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_23850 | (PF12399) | (mitochondrial) | |||
| 1003200.AXXA_15128 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_21123 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_06328 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_03087 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_21803 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_00415 | + | (ER) | |||
| 1003200.AXXA_14628 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_16442 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_21448 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_06793 | (PF07364) (PF07171) | ||||
| 1003200.AXXA_28650 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_06583 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_14348 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_02917 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_03709 | (PF12399) | (plastid) | |||
| 1003200.AXXA_00030 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_30652 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_04493 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_08858 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_10510 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_05358 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_25915 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28840 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_18782 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_05033 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_08074 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_06263 | PF06597 | (plastid) | |||
| 1003200.AXXA_11286 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_21653 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_19372 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_00890 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_26015 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_12812 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_25015 | (PF07364) (PF07171) | ||||
| 1003200.AXXA_07003 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_30712 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28690 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_05338 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_05848 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_21313 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_04111 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_16297 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_15362 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_15502 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_10330 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_25195 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_02877 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_25500 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_05478 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_13759 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_14803 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_13949 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_15327 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_04848 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_04698 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_28260 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_23825 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_26705 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_17436 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_19022 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_21398 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_15462 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_30427 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_11920 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_22935 | (PF07364) (PF07171) | ||||
| 1003200.AXXA_03324 | + | (mitochondrial) | |||
| 1003200.AXXA_12460 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_30212 | (PF02615) | (ER) | |||
| 1003200.AXXA_08678 | (PF12399) | (plastid) | |||
| 1003200.AXXA_24455 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_15947 | (PF00126) (PF03466) | ||||
| 1003200.AXXA_04358 | (PF00126) | ||||
| 1003200.AXXA_31183 | (PF00701) | ||||
| 1003200.AXXA_27080 | + | ||||
| 1003200.AXXA_20531 | + | ||||
| 1003200.AXXA_04548 | (PF12399) | ||||
| 1003200.AXXA_03679 | (PF16155) | ||||
| 1003200.AXXA_28315 | (PF02615) | ||||
| 1003200.AXXA_29220 | (PF12399) | ||||
| 1003200.AXXA_22280 | + | ||||
| 1003200.AXXA_20596 | + | ||||
| 1003200.AXXA_06358 | (PF12399) | ||||
| 1003200.AXXA_12787 | (PF12399) | ||||
| 1003200.AXXA_26875 | + | ||||
| 1003200.AXXA_17666 | + | ||||
| 1003200.AXXA_21593 | (PF14832) | ||||
| 1003200.AXXA_18797 | + | ||||
| 1003200.AXXA_06258 | PF06597 | ||||
| 1003200.AXXA_11900 | + | ||||
| 1003200.AXXA_09648 | (PF00701) | ||||
| 1003200.AXXA_10500 | + | ||||
| 1003200.AXXA_25670 | (PF00701) | ||||
| 1003200.AXXA_02345 | (PF00701) | ||||
| 1003200.AXXA_12862 | (PF02615) | ||||
| 1003200.AXXA_18361 | (PF04199) | ||||
| 1003200.AXXA_09938 | (PF12399) | ||||
| 1003200.AXXA_14174 | (PF05932) | ||||
| 1003200.AXXA_01355 | + | ||||
| 1003200.AXXA_21323 | + | ||||
| 1003200.AXXA_03479 | + | ||||
| 1003200.AXXA_19134 | + | ||||
| 1003200.AXXA_13394 | (PF12399) | ||||
| 1003200.AXXA_18882 | (PF12399) | ||||
| 1003200.AXXA_06238 | (PF00701) | ||||
| 1003200.AXXA_17036 | + | ||||
| 1003200.AXXA_15512 | (PF12399) | ||||
| 1003200.AXXA_03439 | + | ||||
| 1003200.AXXA_24915 | (PF02317) | ||||
| 1003200.AXXA_15537 | (PF04199) | ||||
| 1003200.AXXA_01155 | (PF00342) | ||||
| 1003200.AXXA_01848 | (PF00701) | ||||
| 1003200.AXXA_16307 | (PF00701) | ||||
| 1003200.AXXA_17741 | + | ||||
| 1003200.AXXA_09268 | + | ||||
| 1003200.AXXA_25295 | + | ||||
| 1003200.AXXA_27175 | + | ||||
| 1003200.AXXA_26360 | + | ||||
| 1003200.AXXA_31193 | (PF00701) | not used | |||
| 1003200.AXXA_14383 | (PF12399) | ||||
| 1003200.AXXA_14388 | (PF00701) | ||||
| 1003200.AXXA_28320 | (PF02615) | not used | |||
| 1003200.AXXA_12532 | + | ||||
| 1003200.AXXA_14024 | (PF05932) | ||||
| 1003200.AXXA_13839 | (PF12399) | ||||
| 1003200.AXXA_07989 | (PF04199) | ||||
| 1003200.AXXA_00355 | + | ||||
| 1003200.AXXA_26185 | (PF00701) | ||||
| 1003200.AXXA_11206 | (PF05932) | ||||
| 1003200.AXXA_11201 | (PF05932) | ||||
| 1003200.AXXA_00955 | + | ||||
| 1003200.AXXA_18151 | (PF04199) | ||||
| 1003200.AXXA_16547 | + | ||||
| 1003200.AXXA_08034 | (PF12399) | ||||
| 1003200.AXXA_17536 | + | ||||
| 1003200.AXXA_02547 | (PF00126) | ||||
| 1003200.AXXA_02767 | (PF12399) | ||||
| 1003200.AXXA_07103 | + | ||||
| 1003200.AXXA_24275 | (PF12399) | ||||
| 1003200.AXXA_15922 | + | ||||
| 1003200.AXXA_14089 | (PF07720) | ||||
| 1003200.AXXA_10545 | (PF03466) | ||||
| 1003200.AXXA_28410 | (PF04199) | ||||
| 1003200.AXXA_21483 | (PF04199) | ||||
| 1003200.AXXA_05438 | (PF00701) | ||||
| 1003200.AXXA_28695 | (PF00701) | ||||
| 1003200.AXXA_17216 | (PF12399) | ||||
| 1003200.AXXA_25990 | + | ||||
| 1003200.AXXA_11855 | + | ||||
| 1003200.AXXA_21503 | (PF00165) | ||||
| 1003200.AXXA_11196 | (PF05932) | ||||
| 1003200.AXXA_08778 | (PF02615) | ||||
| 1003200.AXXA_27805 | + | ||||
| 1003200.AXXA_23080 | + | ||||
| 1003200.AXXA_11480 | (PF11969) | ||||
| 1003200.AXXA_30792 | (PF02317) | ||||
| 1003200.AXXA_07859 | (PF12399) | ||||
| 1003200.AXXA_06668 | (PF00342) | ||||
| 1003200.AXXA_07670 | + | ||||
| 1003200.AXXA_28760 | (PF03466) | ||||
| 1003200.AXXA_19617 | + | ||||
| 1003200.AXXA_15617 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.0 (8/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.0 (0/10 KEGG proteins)
Estimated copy number = 1.0 (8/8 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
