Metamenu

Effective results for Streptococcus infantis SK1076 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 87
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 16 proteins (1 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1005705.HMPREF9967_1149+ER
1005705.HMPREF9967_1140(PF03083)(ER)
1005705.HMPREF9967_1707+ER
1005705.HMPREF9967_0542(PF05257)(mitochondrial); (ER)
1005705.HMPREF9967_0971+(mitochondrial); mitochondrial
1005705.HMPREF9967_1544(PF04991)(ER)
1005705.HMPREF9967_1366+ER
1005705.HMPREF9967_0369+ER
1005705.HMPREF9967_1423+ER
1005705.HMPREF9967_0844+ER
1005705.HMPREF9967_0291+ER
1005705.HMPREF9967_0297+ER
1005705.HMPREF9967_1408+ER
1005705.HMPREF9967_1752(PF05257)ER
1005705.HMPREF9967_0110+(mitochondrial); (plastid)
1005705.HMPREF9967_0334(PF05257)ER
1005705.HMPREF9967_0754+ER
1005705.HMPREF9967_0108+ER
1005705.HMPREF9967_0929+ER
1005705.HMPREF9967_1230+ER
1005705.HMPREF9967_1829+ER
1005705.HMPREF9967_1791+ER
1005705.HMPREF9967_1640+ER
1005705.HMPREF9967_0669+mitochondrial
1005705.HMPREF9967_0403+ER
1005705.HMPREF9967_0985+ER
1005705.HMPREF9967_0358+mitochondrial
1005705.HMPREF9967_0185+ER
1005705.HMPREF9967_0151(PF00164)mitochondrial; not used
1005705.HMPREF9967_0513+(ER)
1005705.HMPREF9967_0207+(mitochondrial)
1005705.HMPREF9967_1483+(mitochondrial)
1005705.HMPREF9967_0196+
1005705.HMPREF9967_0724(PF04087)
1005705.HMPREF9967_0947+
1005705.HMPREF9967_0941+
1005705.HMPREF9967_0390+
1005705.HMPREF9967_0408+
1005705.HMPREF9967_0152(PF00164)
1005705.HMPREF9967_1431+
1005705.HMPREF9967_1383+
1005705.HMPREF9967_1098+
1005705.HMPREF9967_1769+
1005705.HMPREF9967_1760+
1005705.HMPREF9967_0380+
1005705.HMPREF9967_1398+
1005705.HMPREF9967_1086+
1005705.HMPREF9967_1561+
1005705.HMPREF9967_1560+
1005705.HMPREF9967_0760+
1005705.HMPREF9967_0618+
1005705.HMPREF9967_1409+
1005705.HMPREF9967_0113+
1005705.HMPREF9967_0330+
1005705.HMPREF9967_0802+
1005705.HMPREF9967_1500+
1005705.HMPREF9967_1322+
1005705.HMPREF9967_0749+
1005705.HMPREF9967_0254+
1005705.HMPREF9967_1683+
1005705.HMPREF9967_1023+
1005705.HMPREF9967_0135+
1005705.HMPREF9967_0482+
1005705.HMPREF9967_0265(PF03083)
1005705.HMPREF9967_0018(PF04087)not used
1005705.HMPREF9967_1538(PF04991)
1005705.HMPREF9967_1536(PF04991)
1005705.HMPREF9967_0500+
1005705.HMPREF9967_0061(PF04087)
1005705.HMPREF9967_0462+
1005705.HMPREF9967_0406+
1005705.HMPREF9967_1813+
1005705.HMPREF9967_1255+
1005705.HMPREF9967_1679+
1005705.HMPREF9967_0078+
1005705.HMPREF9967_0476+
1005705.HMPREF9967_0672+
1005705.HMPREF9967_1800+
1005705.HMPREF9967_0048(PF04991)
1005705.HMPREF9967_0053PF02916
1005705.HMPREF9967_0189+
1005705.HMPREF9967_0987(PF05257)
1005705.HMPREF9967_1467+
1005705.HMPREF9967_1261+
1005705.HMPREF9967_1600+
1005705.HMPREF9967_1047+
1005705.HMPREF9967_0081+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================