Effective results for Methylophaga aminisulfidivorans MP (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 25 proteins (2 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1026882.MAMP_00550(PF01011)ER
1026882.MAMP_03010(PF00909)ER
1026882.MAMP_01598(PF01011)ER
1026882.MAMP_02767(PF01011)ER
1026882.MAMP_01390(PF01011)ER
1026882.MAMP_01386(PF01011)ER
1026882.MAMP_03079(PF00909)ER
1026882.MAMP_01375(PF01011)ER
1026882.MAMP_01372(PF01011)ER
1026882.MAMP_01378(PF01011)ER
1026882.MAMP_00758(PF00909)(ER)
1026882.MAMP_00360PF05735ER
1026882.MAMP_02537(PF05116)
1026882.MAMP_01209(PF01011)
1026882.MAMP_00526(PF05706)
1026882.MAMP_01661(PF10013)not used
1026882.MAMP_00508(PF00909)
1026882.MAMP_02775(PF05116)
1026882.MAMP_01116(PF00909)
1026882.MAMP_02716PF00961
1026882.MAMP_00287(PF03031)
1026882.MAMP_01011(PF06258)
1026882.MAMP_01013(PF06258)
1026882.MAMP_02538(PF05116)
1026882.MAMP_00232(PF16565)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================