Metamenu

Effective results for Sporosarcina newyorkensis 2681 (eggnog40)

Summary

Number of putative secreted proteins: 40
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 40 proteins (1 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1027292.HMPREF9372_3680(PF02600)(ER)
1027292.HMPREF9372_2482(PF03553)mitochondrial; (mitochondrial)
1027292.HMPREF9372_3180(PF03553)ER
1027292.HMPREF9372_1744(PF02028)ER
1027292.HMPREF9372_2137(PF06628)(mitochondrial)
1027292.HMPREF9372_3525(PF02028)ER
1027292.HMPREF9372_3422(PF03553)ER
1027292.HMPREF9372_3421(PF03553)ER
1027292.HMPREF9372_3734(PF02600)(ER)
1027292.HMPREF9372_2459(PF02028)ER
1027292.HMPREF9372_2927(PF06695)ER
1027292.HMPREF9372_1546(PF03553)ER
1027292.HMPREF9372_1545(PF03553)(ER)
1027292.HMPREF9372_1525(PF02600)ER
1027292.HMPREF9372_3166(PF06695)ER
1027292.HMPREF9372_0916(PF03553)ER
1027292.HMPREF9372_0045(PF00965)ER
1027292.HMPREF9372_1939(PF03553)ER
1027292.HMPREF9372_1646(PF02028)ER
1027292.HMPREF9372_2012PF06645ER
1027292.HMPREF9372_1508(PF02028)(ER)
1027292.HMPREF9372_3495(PF02028)
1027292.HMPREF9372_1121(PF01175)
1027292.HMPREF9372_0410(PF00342)
1027292.HMPREF9372_2293(PF06628)
1027292.HMPREF9372_2124(PF01175)
1027292.HMPREF9372_2128(PF01175)
1027292.HMPREF9372_2877(PF06628)
1027292.HMPREF9372_2463(PF06628)
1027292.HMPREF9372_1563(PF06628)
1027292.HMPREF9372_2918(PF14792)
1027292.HMPREF9372_1550(PF01175)
1027292.HMPREF9372_2948(PF06628)
1027292.HMPREF9372_1706(PF00477)
1027292.HMPREF9372_1521(PF02028)
1027292.HMPREF9372_0933(PF00342)not used
1027292.HMPREF9372_2565(PF02028)
1027292.HMPREF9372_3622(PF02600)
1027292.HMPREF9372_3632(PF00342)
1027292.HMPREF9372_1890(PF00477)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================