Effective results for Gordonia alkanivorans NBRC 16433 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 87 proteins (2 high, 85 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1027371.GOALK_050_00620				(PF00756)	ER
1027371.GOALK_056_00610				(PF03583)	ER
1027371.GOALK_029_00320				(PF00756)	(mitochondrial); plastid
1027371.GOALK_097_00510				(PF09995)	(mitochondrial)
1027371.GOALK_029_00450				(PF08310)	(mitochondrial); plastid
1027371.GOALK_040_00070				(PF13810)	ER
1027371.GOALK_045_00850				(PF13810)	ER
1027371.GOALK_016_00740				(PF13810)	ER
1027371.GOALK_050_00060				(PF00756)	(mitochondrial)
1027371.GOALK_038_00670				(PF03583)	ER
1027371.GOALK_023_00240				(PF13810)	ER
1027371.GOALK_050_03170				(PF03583)	ER
1027371.GOALK_029_00530				(PF14494)	ER
1027371.GOALK_056_00500				(PF13622)	(mitochondrial)
1027371.GOALK_056_00340				(PF00756)	ER
1027371.GOALK_045_00720				(PF00756)	ER
1027371.GOALK_056_01280				(PF03583)	ER
1027371.GOALK_120_00300				PF05007	ER
1027371.GOALK_120_01790				(PF08326)	mitochondrial; (mitochondrial)
1027371.GOALK_050_01340				(PF00756)	ER
1027371.GOALK_097_01320				(PF00756)	ER
1027371.GOALK_060_01090				(PF03583)	(mitochondrial); mitochondrial
1027371.GOALK_097_01710				(PF00756)	ER
1027371.GOALK_072_00980				(PF14232) (PF14231)
1027371.GOALK_056_01040				(PF08310) (PF00756)
1027371.GOALK_089_00180				(PF00756)	(ER)
1027371.GOALK_026_00470				(PF02560)	(plastid)
1027371.GOALK_048_00200				(PF09995)	(mitochondrial)
1027371.GOALK_056_00270				(PF00756)	(mitochondrial)
1027371.GOALK_029_00060				(PF14232) (PF14231)
1027371.GOALK_050_00360				(PF03583)
1027371.GOALK_060_00700				(PF02224)
1027371.GOALK_056_00490				(PF13622)
1027371.GOALK_056_01060				(PF00756)
1027371.GOALK_050_03130				(PF03583)
1027371.GOALK_023_00250				(PF17048)
1027371.GOALK_047_00420				(PF13622)
1027371.GOALK_045_00200				(PF09995)
1027371.GOALK_029_00490				(PF09995)
1027371.GOALK_029_00010				(PF07958)
1027371.GOALK_087_00281				(PF09995)
1027371.GOALK_016_01090				(PF09995)
1027371.GOALK_018_00050				(PF03583)
1027371.GOALK_077_00770				(PF04760)	not used
1027371.GOALK_050_03150				(PF03583)
1027371.GOALK_109_00070				(PF13622)
1027371.GOALK_029_00390				(PF09995)
1027371.GOALK_029_00020				(PF12471)
1027371.GOALK_046_00680				(PF09995)
1027371.GOALK_131_00200				(PF00756)
1027371.GOALK_117_00380				(PF09995)
1027371.GOALK_016_00750				(PF13622)
1027371.GOALK_060_00560				(PF01896)
1027371.GOALK_030_00070				(PF13622)
1027371.GOALK_051_00020				(PF03583)
1027371.GOALK_099_00770				(PF13622)
1027371.GOALK_026_00980				(PF03583)
1027371.GOALK_033_00460				(PF00756)
1027371.GOALK_116_00260				(PF08310)
1027371.GOALK_097_02860				(PF09752)
1027371.GOALK_026_00530				(PF09995)
1027371.GOALK_014_00310				(PF13622)
1027371.GOALK_068_00080				(PF00756)
1027371.GOALK_050_02480				(PF13622)
1027371.GOALK_120_01050				(PF11927)
1027371.GOALK_110_00630				(PF09995)
1027371.GOALK_029_00510				(PF08310)
1027371.GOALK_029_00500				(PF09995)
1027371.GOALK_099_00390				(PF09995)
1027371.GOALK_120_01070				(PF11927)
1027371.GOALK_060_00860				PF00910
1027371.GOALK_068_00500				(PF04760)
1027371.GOALK_110_00210				(PF09995)
1027371.GOALK_079_00170				(PF09995)
1027371.GOALK_040_00480				(PF04760)
1027371.GOALK_050_00930				(PF00756)
1027371.GOALK_060_00100				(PF00070)
1027371.GOALK_048_00460				(PF09995)
1027371.GOALK_131_00090				(PF09995)
1027371.GOALK_033_00570				(PF09995)
1027371.GOALK_097_02480				(PF09995)
1027371.GOALK_050_00340				(PF03583)
1027371.GOALK_117_00160				(PF02224)
1027371.GOALK_056_00700				(PF02560)
1027371.GOALK_093_00090				(PF08310)
1027371.GOALK_072_01130				(PF01896)
1027371.GOALK_023_00180				(PF08354)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================