Effective results for Listeria monocytogenes str. Scott A (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 55 proteins (13 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1027396.LMOSA_14530PF12799ER
1027396.LMOSA_29300(PF01074) (PF07748) (PF09261)
1027396.LMOSA_11660PF12799ER
1027396.LMOSA_12570PF12799ER
1027396.LMOSA_13280(PF01074) (PF07748) (PF09261)
1027396.LMOSA_12370PF12799ER
1027396.LMOSA_12360PF12799ER
1027396.LMOSA_11730PF12799ER
1027396.LMOSA_13480PF12799(ER); ER
1027396.LMOSA_1670(PF05738)ER
1027396.LMOSA_720(PF05738)ER
1027396.LMOSA_10560(PF05738)mitochondrial
1027396.LMOSA_13030(PF01074) (PF07748) (PF09261)
1027396.LMOSA_13110PF12799ER
1027396.LMOSA_2450(PF05738)ER
1027396.LMOSA_13470PF12799ER
1027396.LMOSA_1680(PF05738)ER
1027396.LMOSA_29290(PF01074) (PF07748) (PF09261)
1027396.LMOSA_13240(PF00359)(mitochondrial)
1027396.LMOSA_4700PF14712ER
1027396.LMOSA_11650PF12799ER
1027396.LMOSA_27080PF12799(mitochondrial); mitochondrial
1027396.LMOSA_11670PF12799ER
1027396.LMOSA_7010(PF01074) (PF07748)
1027396.LMOSA_10530(PF06777)
1027396.LMOSA_27410(PF00834)
1027396.LMOSA_12020(PF00359)
1027396.LMOSA_7640(PF00359)
1027396.LMOSA_14080(PF00359)
1027396.LMOSA_14060(PF00359)
1027396.LMOSA_13250(PF00359)
1027396.LMOSA_7090(PF07653)
1027396.LMOSA_10550(PF05738)
1027396.LMOSA_850(PF00359)
1027396.LMOSA_6260(PF00834)
1027396.LMOSA_2940(PF00359)
1027396.LMOSA_14040(PF00834)
1027396.LMOSA_12610(PF00359)
1027396.LMOSA_13000(PF00359)
1027396.LMOSA_17640(PF00359)
1027396.LMOSA_860(PF00359)
1027396.LMOSA_6340(PF00359)
1027396.LMOSA_14100(PF00834)
1027396.LMOSA_15320(PF00359)
1027396.LMOSA_6350(PF00359)
1027396.LMOSA_7000(PF00359)
1027396.LMOSA_6180(PF00359)
1027396.LMOSA_15330(PF00359)
1027396.LMOSA_18100(PF00359)
1027396.LMOSA_13040(PF00359)
1027396.LMOSA_6280(PF00834)
1027396.LMOSA_6170(PF00359)
1027396.LMOSA_17540(PF08950)
1027396.LMOSA_1260(PF00359)
1027396.LMOSA_7540(PF00359)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================