Effective results for Haemophilus haemolyticus M21621 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 48 proteins (4 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1028805.GGC_1350				(PF14714)	(mitochondrial); (plastid)
1028805.GGC_0753				(PF14714)	(mitochondrial); (plastid)
1028805.GGC_0391				(PF01755)	mitochondrial; (mitochondrial)
1028805.GGC_1213				(PF14743)	ER
1028805.GGC_0888				(PF14743)	ER
1028805.GGC_1319				(PF02367)
1028805.GGC_1310				(PF08459)
1028805.GGC_0849				(PF01225)
1028805.GGC_0840				(PF01795)
1028805.GGC_0843				(PF01225)
1028805.GGC_0844				(PF01225)
1028805.GGC_1279				(PF07650)
1028805.GGC_1197				(PF02130)
1028805.GGC_0713				(PF02938)
1028805.GGC_0718				(PF05491)
1028805.GGC_0904				(PF02130)
1028805.GGC_1294				(PF02410)
1028805.GGC_0809				(PF02410)
1028805.GGC_1280				(PF14622)
1028805.GGC_1282				(PF06421)
1028805.GGC_1261				(PF01225)
1028805.GGC_1260				(PF01225)
1028805.GGC_0738				(PF04384)
1028805.GGC_0774				(PF04305)
1028805.GGC_1255				(PF01225)
1028805.GGC_1385				(PF05491)
1028805.GGC_1322				(PF01715)
1028805.GGC_1328				PF02551
1028805.GGC_1329				(PF04305)
1028805.GGC_0822				(PF06421)
1028805.GGC_0824				(PF14622)
1028805.GGC_0825				(PF07650)
1028805.GGC_1390				(PF02938)
1028805.GGC_0837				PF10571
1028805.GGC_1267				PF10571
1028805.GGC_1264				(PF01795)
1028805.GGC_0775				PF02551
1028805.GGC_1747				(PF01225)
1028805.GGC_1748				(PF10063)
1028805.GGC_0344				(PF01755)
1028805.GGC_1365				(PF04384)
1028805.GGC_0501				(PF01755)
1028805.GGC_0502				(PF05704)
1028805.GGC_0793				(PF08459)
1028805.GGC_0781				(PF01715)
1028805.GGC_0784				(PF02367)
1028805.GGC_0092				(PF07650)
1028805.GGC_0957				(PF04664)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================