Metamenu

Effective results for Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 (eggnog40)

Summary

Number of putative secreted proteins: 138
- Predicted by T4SEpre: 109
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 53 proteins (5 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1035184.HMPREF1042_2325+(mitochondrial)
1035184.HMPREF1042_1670+(mitochondrial)
1035184.HMPREF1042_0074+mitochondrial; (mitochondrial)
1035184.HMPREF1042_1090+(ER)
1035184.HMPREF1042_0658+ER
1035184.HMPREF1042_0331+ER
1035184.HMPREF1042_1890+ER
1035184.HMPREF1042_0656(PF00137)ER
1035184.HMPREF1042_1081+ER
1035184.HMPREF1042_1741+ER
1035184.HMPREF1042_0343+ER
1035184.HMPREF1042_0588+(mitochondrial); (plastid)
1035184.HMPREF1042_1648+(mitochondrial)
1035184.HMPREF1042_2426+(mitochondrial)
1035184.HMPREF1042_2433(PF00137)ER; (ER)
1035184.HMPREF1042_1167+ER
1035184.HMPREF1042_0161+(ER)
1035184.HMPREF1042_0491+ER
1035184.HMPREF1042_2149(PF05738)(mitochondrial)
1035184.HMPREF1042_1934(PF05738)ER
1035184.HMPREF1042_1739+ER
1035184.HMPREF1042_1027+ER
1035184.HMPREF1042_2150+ER
1035184.HMPREF1042_1846(PF06418)(mitochondrial)
1035184.HMPREF1042_0259+(PF01795)
1035184.HMPREF1042_2432(PF00137)(ER); not used
1035184.HMPREF1042_1572(PF14022)(mitochondrial)
1035184.HMPREF1042_0706(PF01715)(mitochondrial)
1035184.HMPREF1042_0737+(mitochondrial)
1035184.HMPREF1042_2102+
1035184.HMPREF1042_1456+
1035184.HMPREF1042_0419+
1035184.HMPREF1042_1845(PF06418)
1035184.HMPREF1042_1847+
1035184.HMPREF1042_1309+
1035184.HMPREF1042_0782(PF01746)
1035184.HMPREF1042_2003+
1035184.HMPREF1042_2137(PF05738)
1035184.HMPREF1042_2136(PF05738)
1035184.HMPREF1042_2317+
1035184.HMPREF1042_0938PF00910
1035184.HMPREF1042_1207(PF05257)
1035184.HMPREF1042_1682+
1035184.HMPREF1042_0640(PF02229)
1035184.HMPREF1042_0333+
1035184.HMPREF1042_0536+
1035184.HMPREF1042_0027+
1035184.HMPREF1042_1897PF00572
1035184.HMPREF1042_1898PF00572
1035184.HMPREF1042_2494+
1035184.HMPREF1042_2495(PF05257)
1035184.HMPREF1042_1422+
1035184.HMPREF1042_0695+
1035184.HMPREF1042_1306(PF02502)
1035184.HMPREF1042_0433+
1035184.HMPREF1042_1352(PF00438)
1035184.HMPREF1042_1604+
1035184.HMPREF1042_1887(PF05738)
1035184.HMPREF1042_1883(PF02502)
1035184.HMPREF1042_0916+
1035184.HMPREF1042_1462+
1035184.HMPREF1042_2512(PF05257)
1035184.HMPREF1042_1797+
1035184.HMPREF1042_2194(PF02938)
1035184.HMPREF1042_0781(PF01746)
1035184.HMPREF1042_2075(PF01193)
1035184.HMPREF1042_2076(PF01193)
1035184.HMPREF1042_0900+
1035184.HMPREF1042_2216+
1035184.HMPREF1042_1411+
1035184.HMPREF1042_1326+
1035184.HMPREF1042_0346+
1035184.HMPREF1042_0209+
1035184.HMPREF1042_2445+
1035184.HMPREF1042_1248+
1035184.HMPREF1042_1334+
1035184.HMPREF1042_0029+
1035184.HMPREF1042_0856+
1035184.HMPREF1042_2058+
1035184.HMPREF1042_2239(PF09359)
1035184.HMPREF1042_0587+
1035184.HMPREF1042_1295+
1035184.HMPREF1042_0367+
1035184.HMPREF1042_2087PF00347
1035184.HMPREF1042_2088PF00347
1035184.HMPREF1042_1602(PF02502)
1035184.HMPREF1042_1603(PF02502)
1035184.HMPREF1042_1773+
1035184.HMPREF1042_2280+
1035184.HMPREF1042_0941+
1035184.HMPREF1042_0167+
1035184.HMPREF1042_0764+
1035184.HMPREF1042_0249+
1035184.HMPREF1042_1573(PF14022)
1035184.HMPREF1042_1400(PF05738)
1035184.HMPREF1042_1401+
1035184.HMPREF1042_0532+
1035184.HMPREF1042_0535+
1035184.HMPREF1042_0534+
1035184.HMPREF1042_1397(PF05738)
1035184.HMPREF1042_1390+
1035184.HMPREF1042_1398(PF05738)
1035184.HMPREF1042_1399(PF05738)
1035184.HMPREF1042_2417(PF05738)
1035184.HMPREF1042_0639+
1035184.HMPREF1042_0707(PF01715)not used
1035184.HMPREF1042_0035+
1035184.HMPREF1042_0033+
1035184.HMPREF1042_0634+
1035184.HMPREF1042_1225+
1035184.HMPREF1042_1801(PF02938)
1035184.HMPREF1042_1930(PF03714)
1035184.HMPREF1042_1936+
1035184.HMPREF1042_2173+
1035184.HMPREF1042_0998+
1035184.HMPREF1042_0866(PF00438)
1035184.HMPREF1042_2352(PF02229)
1035184.HMPREF1042_1157(PF02224)
1035184.HMPREF1042_1158(PF02224)
1035184.HMPREF1042_1159(PF02224)
1035184.HMPREF1042_0046+
1035184.HMPREF1042_2077+
1035184.HMPREF1042_0622+
1035184.HMPREF1042_2344(PF05257)
1035184.HMPREF1042_1589+
1035184.HMPREF1042_1234(PF00438)
1035184.HMPREF1042_0502+
1035184.HMPREF1042_0507(PF02502)
1035184.HMPREF1042_1910+
1035184.HMPREF1042_2112+
1035184.HMPREF1042_0883(PF03714)
1035184.HMPREF1042_2335+
1035184.HMPREF1042_1134+
1035184.HMPREF1042_2153+
1035184.HMPREF1042_2240(PF09359)
1035184.HMPREF1042_0260(PF01795)
1035184.HMPREF1042_0066+
1035184.HMPREF1042_0409+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================