Metamenu

Effective results for Streptococcus infantis SK970 (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 32 proteins (1 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1035189.HMPREF9954_0520PF02916(ER)
1035189.HMPREF9954_1246(PF03083)(ER)
1035189.HMPREF9954_0332+ER
1035189.HMPREF9954_1040+ER
1035189.HMPREF9954_1457+ER
1035189.HMPREF9954_0865+ER
1035189.HMPREF9954_0644+mitochondrial
1035189.HMPREF9954_0102+mitochondrial
1035189.HMPREF9954_0675+(mitochondrial)
1035189.HMPREF9954_2165+ER
1035189.HMPREF9954_0069+ER
1035189.HMPREF9954_1233+ER; (ER)
1035189.HMPREF9954_0615+ER
1035189.HMPREF9954_0636+ER
1035189.HMPREF9954_0043+ER
1035189.HMPREF9954_1763+(mitochondrial); (plastid)
1035189.HMPREF9954_0410(PF05257)(ER)
1035189.HMPREF9954_0390(PF03644)(mitochondrial)
1035189.HMPREF9954_0884+ER
1035189.HMPREF9954_1597(PF04991)(ER)
1035189.HMPREF9954_1593(PF04991)ER
1035189.HMPREF9954_0161(PF05257)(ER)
1035189.HMPREF9954_0985+ER
1035189.HMPREF9954_0170+ER
1035189.HMPREF9954_2113+ER
1035189.HMPREF9954_0806+(plastid)
1035189.HMPREF9954_2065+(mitochondrial)
1035189.HMPREF9954_1687(PF01351)(plastid)
1035189.HMPREF9954_1504+(mitochondrial)
1035189.HMPREF9954_1525+(mitochondrial)
1035189.HMPREF9954_0144+(mitochondrial)
1035189.HMPREF9954_0086+(ER)
1035189.HMPREF9954_0986+(mitochondrial)
1035189.HMPREF9954_1118+
1035189.HMPREF9954_0832(PF01746)
1035189.HMPREF9954_0831(PF01746)
1035189.HMPREF9954_0747+
1035189.HMPREF9954_0746+
1035189.HMPREF9954_0525(PF04991)
1035189.HMPREF9954_1836+
1035189.HMPREF9954_0235+
1035189.HMPREF9954_1465+
1035189.HMPREF9954_2049+
1035189.HMPREF9954_1662+
1035189.HMPREF9954_0229+
1035189.HMPREF9954_0326(PF05257)
1035189.HMPREF9954_0819+
1035189.HMPREF9954_1925+
1035189.HMPREF9954_1816(PF05257)
1035189.HMPREF9954_1811+
1035189.HMPREF9954_0251+
1035189.HMPREF9954_2068(PF05257)
1035189.HMPREF9954_1868+
1035189.HMPREF9954_0240(PF05167)
1035189.HMPREF9954_0241(PF05167)
1035189.HMPREF9954_1300+
1035189.HMPREF9954_1054(PF02475)
1035189.HMPREF9954_0478+
1035189.HMPREF9954_0315+
1035189.HMPREF9954_0663+
1035189.HMPREF9954_1193(PF01351)
1035189.HMPREF9954_1194(PF01351)
1035189.HMPREF9954_1198+
1035189.HMPREF9954_1205+
1035189.HMPREF9954_1731+
1035189.HMPREF9954_0482+
1035189.HMPREF9954_1994+
1035189.HMPREF9954_1219(PF14311)
1035189.HMPREF9954_0851+
1035189.HMPREF9954_1858+
1035189.HMPREF9954_1857+
1035189.HMPREF9954_1989+
1035189.HMPREF9954_0060(PF09359)
1035189.HMPREF9954_0061(PF09359)
1035189.HMPREF9954_0932(PF02978)
1035189.HMPREF9954_0930+
1035189.HMPREF9954_0931(PF02978)
1035189.HMPREF9954_1406+
1035189.HMPREF9954_0445+
1035189.HMPREF9954_1884+
1035189.HMPREF9954_0056+
1035189.HMPREF9954_1091+
1035189.HMPREF9954_0137(PF05257)
1035189.HMPREF9954_0139+
1035189.HMPREF9954_1940+
1035189.HMPREF9954_0097+
1035189.HMPREF9954_0096+
1035189.HMPREF9954_1764+
1035189.HMPREF9954_1766+
1035189.HMPREF9954_1615+
1035189.HMPREF9954_2123(PF03083)
1035189.HMPREF9954_2012+
1035189.HMPREF9954_0415(PF01795)
1035189.HMPREF9954_0416(PF01795)
1035189.HMPREF9954_1592(PF04991)
1035189.HMPREF9954_1112+
1035189.HMPREF9954_1116+
1035189.HMPREF9954_0369+
1035189.HMPREF9954_1563+
1035189.HMPREF9954_1636(PF03668)
1035189.HMPREF9954_1634(PF03668)not used
1035189.HMPREF9954_1635(PF03668)
1035189.HMPREF9954_2210+
1035189.HMPREF9954_2109+
1035189.HMPREF9954_1966+
1035189.HMPREF9954_0211+
1035189.HMPREF9954_0197+
1035189.HMPREF9954_1131+
1035189.HMPREF9954_1004+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================