Effective results for Lactobacillus ruminis SPM0211 (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 46 proteins (2 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1040964.LRU_01700(PF13127)ER
1040964.LRU_00432(PF02485)(ER)
1040964.LRU_01196(PF00872)(mitochondrial)
1040964.LRU_00928(PF13518)
1040964.LRU_00927(PF13276)
1040964.LRU_01253(PF00872)
1040964.LRU_02208(PF00872)
1040964.LRU_01304(PF00872)
1040964.LRU_01874(PF05495)
1040964.LRU_00198(PF00872)
1040964.LRU_01467(PF04765)
1040964.LRU_01469(PF04991)
1040964.LRU_00857(PF00872)
1040964.LRU_00985(PF00872)
1040964.LRU_02152PF08357
1040964.LRU_01447(PF02485)
1040964.LRU_00884(PF00872)
1040964.LRU_01121(PF00872)
1040964.LRU_00894(PF13276)
1040964.LRU_00557(PF13276)
1040964.LRU_00558(PF13518)
1040964.LRU_01429(PF04991)
1040964.LRU_01556(PF00872)
1040964.LRU_00610(PF13518)
1040964.LRU_00611(PF13276)
1040964.LRU_01083(PF03577)
1040964.LRU_01884PF08357
1040964.LRU_00627(PF13276)
1040964.LRU_00628(PF13518)
1040964.LRU_00025(PF13276)
1040964.LRU_00026(PF13518)
1040964.LRU_01575(PF13276)
1040964.LRU_00368(PF13518)
1040964.LRU_00367(PF13276)
1040964.LRU_02073(PF13276)
1040964.LRU_01508(PF00872)
1040964.LRU_01211(PF00872)
1040964.LRU_01219(PF00872)
1040964.LRU_01179(PF04991)
1040964.LRU_01411(PF00872)
1040964.LRU_01996(PF00872)
1040964.LRU_00343(PF03577)
1040964.LRU_01522(PF13276)
1040964.LRU_01233(PF13276)
1040964.LRU_00934(PF00872)
1040964.LRU_02318(PF03577)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================