Effective results for Pseudomonas putida S16 (eggnog40)

Summary

Number of putative secreted proteins: 698
- Predicted by EffectiveT3: 193 (high confidence), 291 (low confidence)
- Predicted by EffectiveCCBD: 21 within, 9 before, 40 behind expected region 25..70aa
- Predicted by T4SEpre: 113
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 81 proteins (24 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1042876.PPS_4860			+	(PF02416)	ER
1042876.PPS_4890			+	(PF10142)	(ER)
1042876.PPS_0338		+			ER
1042876.PPS_0447		(>)			mitochondrial; (mitochondrial)
1042876.PPS_3025				(PF01852)	ER
1042876.PPS_0503		+			mitochondrial
1042876.PPS_2737			+		ER
1042876.PPS_0614			+		ER
1042876.PPS_1208			+		(ER)
1042876.PPS_0509				(PF09619)	ER; (ER)
1042876.PPS_4133			+		(ER); ER
1042876.PPS_1086				(PF02416)	ER
1042876.PPS_1085				(PF02416)	ER
1042876.PPS_2991				(PF06039)	ER
1042876.PPS_1621	+				ER
1042876.PPS_3175	+				(mitochondrial); plastid
1042876.PPS_3177			+		ER
1042876.PPS_3562		(>)			ER
1042876.PPS_2527			+		ER
1042876.PPS_0860		(>)			ER; (ER)
1042876.PPS_2988			+		ER
1042876.PPS_2187			+		ER
1042876.PPS_2743			+		ER
1042876.PPS_2921	+				(mitochondrial); (plastid)
1042876.PPS_3972				(PF06039)	ER
1042876.PPS_3596				(PF01852)	ER
1042876.PPS_2518			+		ER
1042876.PPS_0248				(PF13488)	ER
1042876.PPS_1590			+		ER
1042876.PPS_3746		(>)			ER
1042876.PPS_3903		+			ER
1042876.PPS_0313		+			(ER); (mitochondrial)
1042876.PPS_5239	+				ER
1042876.PPS_3340				(PF13488)	ER
1042876.PPS_4343		(<)			ER
1042876.PPS_0075		(<)			ER
1042876.PPS_0076			+		ER
1042876.PPS_1329		(>)			(mitochondrial)
1042876.PPS_0301			+		ER
1042876.PPS_0399		+			ER
1042876.PPS_3454			+		ER
1042876.PPS_0829				(PF13488)	ER
1042876.PPS_4537	+				(mitochondrial); plastid
1042876.PPS_1337			+		(ER); (plastid)
1042876.PPS_4449				PF02371	mitochondrial
1042876.PPS_1871				(PF01695)	mitochondrial; (mitochondrial)
1042876.PPS_2264				(PF13488)	ER
1042876.PPS_1640	+				ER; (ER)
1042876.PPS_1139			+		ER
1042876.PPS_4859				(PF02416)	ER
1042876.PPS_1860			+		ER
1042876.PPS_4146	+				(mitochondrial)
1042876.PPS_2075		(<)			ER
1042876.PPS_0232		(>)			ER
1042876.PPS_5155	+				(ER)
1042876.PPS_5202			+		ER
1042876.PPS_4284		+			ER
1042876.PPS_4048				(PF02416)	ER
1042876.PPS_3254		(>)			ER
1042876.PPS_0342				(PF06293)	ER; (ER)
1042876.PPS_1440			+		ER
1042876.PPS_1508		(>)			ER
1042876.PPS_0408			+		ER
1042876.PPS_3484		+			(ER)
1042876.PPS_0976		(>)			(mitochondrial)
1042876.PPS_2906		+			ER
1042876.PPS_2908			+		ER
1042876.PPS_3276		(>)			ER
1042876.PPS_0184			+		ER
1042876.PPS_3710		(>)			(mitochondrial)
1042876.PPS_0568				(PF07678)	ER
1042876.PPS_3946			+		ER
1042876.PPS_3998		(>)			ER
1042876.PPS_3994			+		ER
1042876.PPS_3952			+		ER
1042876.PPS_1684				(PF06039)	ER
1042876.PPS_3784	+				(mitochondrial); plastid
1042876.PPS_4020			+		ER
1042876.PPS_5250			+		ER
1042876.PPS_3741			+		ER
1042876.PPS_0547			+		(mitochondrial)
1042876.PPS_2466			+		(ER)
1042876.PPS_2522	+		+
1042876.PPS_0339				(PF06293)	(mitochondrial)
1042876.PPS_1596	(+)				ER; (ER)
1042876.PPS_0145	(+)				mitochondrial
1042876.PPS_3743	(+)				(ER)
1042876.PPS_0322		(>)		(PF05598)
1042876.PPS_3169	+			PF02371
1042876.PPS_1896	+				(mitochondrial)
1042876.PPS_1891	(+)				(mitochondrial)
1042876.PPS_3557			+	PF02371
1042876.PPS_3793	+				plastid
1042876.PPS_2337	(+)				ER
1042876.PPS_0136		(>)		(PF05598)
1042876.PPS_3005	(+)				mitochondrial
1042876.PPS_0599	(+)				(ER)
1042876.PPS_4370	+				plastid
1042876.PPS_3763	+				(plastid)
1042876.PPS_4279	+				(plastid)
1042876.PPS_2700	(+)				(ER)
1042876.PPS_1429	+			(PF01695)
1042876.PPS_2423		(>)		(PF05598)
1042876.PPS_2425	(+)				(mitochondrial)
1042876.PPS_0808				(PF06039)	(ER)
1042876.PPS_2019	+	(<)
1042876.PPS_3349	+				(plastid)
1042876.PPS_3120			+		(ER)
1042876.PPS_3780	+				plastid
1042876.PPS_2880	+				(plastid)
1042876.PPS_4382	(+)				(mitochondrial); (plastid)
1042876.PPS_1840	(+)				(ER)
1042876.PPS_1117		(>)			(mitochondrial)
1042876.PPS_4884	(+)				(ER)
1042876.PPS_2254	+		+
1042876.PPS_5260	+				(mitochondrial)
1042876.PPS_4625	+				(plastid)
1042876.PPS_0639	(+)				(mitochondrial); plastid
1042876.PPS_0701	+				plastid
1042876.PPS_2949			+		(ER)
1042876.PPS_1477	+				(ER)
1042876.PPS_1482			+		(ER)
1042876.PPS_5033	(+)				(mitochondrial); (plastid)
1042876.PPS_0358	+		+
1042876.PPS_3641	+				(ER)
1042876.PPS_4047				(PF02416)	(mitochondrial)
1042876.PPS_4863			+		(mitochondrial)
1042876.PPS_3673	(+)				(mitochondrial)
1042876.PPS_0371	+				(ER)
1042876.PPS_0345	(+)				mitochondrial
1042876.PPS_0119	+				(plastid)
1042876.PPS_5054	+				(ER)
1042876.PPS_1021	+				plastid
1042876.PPS_4508		(>)		(PF05598)
1042876.PPS_3248	+				plastid
1042876.PPS_3668		(>)		(PF05598)
1042876.PPS_2636	+				(ER)
1042876.PPS_2025		+			(ER)
1042876.PPS_3996	(+)				(ER)
1042876.PPS_0967		(<)	+
1042876.PPS_5103	(+)				ER
1042876.PPS_1222	+		+
1042876.PPS_0176	+				(mitochondrial)
1042876.PPS_1688	(+)				(ER)
1042876.PPS_3450	+				plastid
1042876.PPS_1035	(+)				ER; (ER)
1042876.PPS_4255	(+)				(mitochondrial); (plastid)
1042876.PPS_1766	(+)				(mitochondrial)
1042876.PPS_4798	(+)				mitochondrial
1042876.PPS_0783		(>)		(PF05598)
1042876.PPS_0788		(>)		(PF05598)
1042876.PPS_4231	(+)				(mitochondrial); (plastid)
1042876.PPS_1693		(>)
1042876.PPS_0825	+
1042876.PPS_0949	+
1042876.PPS_1205		(<)
1042876.PPS_5038	(+)		+
1042876.PPS_4250	+
1042876.PPS_1376	+
1042876.PPS_3184	+
1042876.PPS_3205				(PF05598)
1042876.PPS_4433	(+)				mitochondrial
1042876.PPS_1158		(>)
1042876.PPS_4987	+
1042876.PPS_4327				(PF06293)
1042876.PPS_2559	+
1042876.PPS_1768		(>)
1042876.PPS_1503	+
1042876.PPS_3153	+
1042876.PPS_3159		(>)
1042876.PPS_1501	+
1042876.PPS_2770			+
1042876.PPS_2778	+
1042876.PPS_2016	+
1042876.PPS_3781				(PF05598)
1042876.PPS_2301	+				not used
1042876.PPS_2303		(<)
1042876.PPS_1716			+
1042876.PPS_2329		+
1042876.PPS_5176	+
1042876.PPS_0848	(+)				plastid
1042876.PPS_3237	+
1042876.PPS_3234			+
1042876.PPS_4685	+
1042876.PPS_0615		(>)
1042876.PPS_2781	+
1042876.PPS_0217				PF02371
1042876.PPS_1940	+
1042876.PPS_3165	+
1042876.PPS_3160				(PF05598)
1042876.PPS_3995			+
1042876.PPS_1372		(>)
1042876.PPS_3553	+
1042876.PPS_3551	+
1042876.PPS_3796		(>)
1042876.PPS_3792	+
1042876.PPS_2680				(PF01695)
1042876.PPS_3798	+
1042876.PPS_2374	+
1042876.PPS_3489	+
1042876.PPS_0924	+
1042876.PPS_2334			+
1042876.PPS_0850			+
1042876.PPS_1318	+				plastid
1042876.PPS_1538			+
1042876.PPS_0133				PF02371
1042876.PPS_1629	+
1042876.PPS_4349	(+)				(mitochondrial)
1042876.PPS_0660	+
1042876.PPS_0665	(+)				(plastid)
1042876.PPS_0168			+
1042876.PPS_2196	+
1042876.PPS_0182			+
1042876.PPS_0634	+
1042876.PPS_2364			+
1042876.PPS_1122				PF02371
1042876.PPS_0862		(>)
1042876.PPS_2212		(>)
1042876.PPS_2210	+
1042876.PPS_4596	+
1042876.PPS_4759	(+)				(plastid)
1042876.PPS_1436	+
1042876.PPS_1434	(+)		+
1042876.PPS_1431			+
1042876.PPS_3363				(PF05598)
1042876.PPS_0056	+
1042876.PPS_0694			+
1042876.PPS_4974		+
1042876.PPS_4971	+
1042876.PPS_0473	(+)		+
1042876.PPS_3108	+
1042876.PPS_2183	+
1042876.PPS_2182				PF02371
1042876.PPS_3617	+
1042876.PPS_2742	+
1042876.PPS_4096	+
1042876.PPS_3024	+
1042876.PPS_3806	+
1042876.PPS_3774	+
1042876.PPS_2359	(+)				plastid
1042876.PPS_2353	+
1042876.PPS_1872	(+)				(plastid)
1042876.PPS_5078	+
1042876.PPS_0259	+
1042876.PPS_2224	+
1042876.PPS_4586				(PF01695)
1042876.PPS_1427			+
1042876.PPS_4965	+
1042876.PPS_4962	+
1042876.PPS_1078				(PF01129)
1042876.PPS_1170	(+)			(PF09619)
1042876.PPS_0487	+
1042876.PPS_4438	+
1042876.PPS_2735				PF02371
1042876.PPS_2731				PF02371
1042876.PPS_0864			+
1042876.PPS_2644		+
1042876.PPS_3749			+
1042876.PPS_3740				(PF04488)
1042876.PPS_2340	+
1042876.PPS_5242			+
1042876.PPS_5193	+
1042876.PPS_1291				PF02371
1042876.PPS_1452	(+)	(<)
1042876.PPS_1453				(PF06293)
1042876.PPS_2968				PF02371
1042876.PPS_0079	+
1042876.PPS_2502	+
1042876.PPS_1328	(+)				(plastid)
1042876.PPS_0254		(>)
1042876.PPS_0250	+
1042876.PPS_3290	+
1042876.PPS_3292			+
1042876.PPS_0309	+
1042876.PPS_1851	+
1042876.PPS_3783	+
1042876.PPS_3632				PF02371
1042876.PPS_3785	+
1042876.PPS_0223	+
1042876.PPS_3934	+
1042876.PPS_2240	(+)				(mitochondrial)
1042876.PPS_2082		+
1042876.PPS_4116	+
1042876.PPS_2085	+
1042876.PPS_4765	+
1042876.PPS_4169		+
1042876.PPS_0391	+
1042876.PPS_5019	+
1042876.PPS_4545				PF02371
1042876.PPS_1064			+
1042876.PPS_4385	+
1042876.PPS_1711				PF02371
1042876.PPS_0712	+
1042876.PPS_0716		+
1042876.PPS_3136	+
1042876.PPS_3132	(+)				(mitochondrial)
1042876.PPS_4833	+
1042876.PPS_0538	+
1042876.PPS_2726	+				not used
1042876.PPS_2664	+
1042876.PPS_2255			+
1042876.PPS_2094	+
1042876.PPS_4716			+
1042876.PPS_4712		(>)
1042876.PPS_5178	+
1042876.PPS_2382				(PF00926)
1042876.PPS_2894	+
1042876.PPS_1270		(>)
1042876.PPS_1275	+
1042876.PPS_0381	+
1042876.PPS_0015			+
1042876.PPS_0635				(PF01695)
1042876.PPS_0708	+
1042876.PPS_0707	(+)	+
1042876.PPS_4847	+
1042876.PPS_2414		+
1042876.PPS_0525				(PF00926)
1042876.PPS_1478		+
1042876.PPS_2704	+
1042876.PPS_3739	(+)			(PF04488)
1042876.PPS_3738	+
1042876.PPS_4065	+
1042876.PPS_2670	(+)				(mitochondrial)
1042876.PPS_2673	+
1042876.PPS_3939	+
1042876.PPS_0835			+
1042876.PPS_0834	(+)	(<)
1042876.PPS_0833		+
1042876.PPS_4701	(+)		+
1042876.PPS_3067	+
1042876.PPS_5035	+
1042876.PPS_5032			+
1042876.PPS_4037			+
1042876.PPS_4038	+				not used
1042876.PPS_1732	+
1042876.PPS_0735	+
1042876.PPS_4852			+
1042876.PPS_4851			+
1042876.PPS_0513				(PF00926)
1042876.PPS_4145	+
1042876.PPS_3397				(PF01695)
1042876.PPS_0819		(>)
1042876.PPS_3649			+
1042876.PPS_0626	+
1042876.PPS_1130			+
1042876.PPS_2279			+
1042876.PPS_0108	+
1042876.PPS_3891	+
1042876.PPS_1123	+
1042876.PPS_2858		(>)
1042876.PPS_2857	+
1042876.PPS_2299				(PF01695)
1042876.PPS_1313	(+)				(plastid)
1042876.PPS_0517	+
1042876.PPS_5021	+
1042876.PPS_4042	+				not used
1042876.PPS_4496	(+)		+
1042876.PPS_3251	(+)				(mitochondrial)
1042876.PPS_3099				PF02371
1042876.PPS_1163	+
1042876.PPS_4999				PF02371
1042876.PPS_3092	+
1042876.PPS_0721	+
1042876.PPS_0341				(PF06293)
1042876.PPS_3670				(PF01695)
1042876.PPS_3677				PF02371
1042876.PPS_1681	+				not used
1042876.PPS_3678		(>)
1042876.PPS_2925	(+)				(plastid)
1042876.PPS_1815	+
1042876.PPS_1811	+
1042876.PPS_3712	+
1042876.PPS_4360	+
1042876.PPS_2040				(PF01695)
1042876.PPS_4729	+
1042876.PPS_4723			+
1042876.PPS_5125	+
1042876.PPS_0221	+
1042876.PPS_3503	+
1042876.PPS_5059			+
1042876.PPS_5056	+
1042876.PPS_5012	+
1042876.PPS_1759	(+)				plastid
1042876.PPS_1755	+
1042876.PPS_4471	+
1042876.PPS_1146			+
1042876.PPS_0407	(+)	(>)
1042876.PPS_5133	+
1042876.PPS_5130			+
1042876.PPS_4445	+
1042876.PPS_3982	+
1042876.PPS_3500	(+)				(mitochondrial)
1042876.PPS_3505	+
1042876.PPS_4040				(PF01695)
1042876.PPS_0974			+
1042876.PPS_0978		(>)
1042876.PPS_2836			+
1042876.PPS_1237				(PF01695)
1042876.PPS_5042	+
1042876.PPS_3273				(PF00926)
1042876.PPS_1169	(+)			(PF09619)
1042876.PPS_2407	+
1042876.PPS_4888				PF02371
1042876.PPS_4661	+
1042876.PPS_0363	+
1042876.PPS_0129	+
1042876.PPS_0416		+
1042876.PPS_0414				PF02371
1042876.PPS_2584	+
1042876.PPS_2583	+
1042876.PPS_2634	+
1042876.PPS_0508	(+)				(plastid)
1042876.PPS_0542	+
1042876.PPS_3466	+				not used
1042876.PPS_0549			+
1042876.PPS_2024			+
1042876.PPS_3990	+
1042876.PPS_3862		(>)
1042876.PPS_4214			+
1042876.PPS_2717	+
1042876.PPS_5106	+
1042876.PPS_4672		(>)
1042876.PPS_4679				PF02371
1042876.PPS_5219			+
1042876.PPS_3823	+
1042876.PPS_4079			+
1042876.PPS_3277			+
1042876.PPS_4071			+
1042876.PPS_1576	+
1042876.PPS_0085				PF02371
1042876.PPS_1658	+
1042876.PPS_2070			+
1042876.PPS_0795			+
1042876.PPS_4089				(PF01695)
1042876.PPS_1674	+
1042876.PPS_1109	+
1042876.PPS_1043	+
1042876.PPS_1824	+
1042876.PPS_4735	+
1042876.PPS_1820	(+)				(plastid)
1042876.PPS_0552	+
1042876.PPS_3041	+
1042876.PPS_4104	+
1042876.PPS_1771	(+)				(mitochondrial)
1042876.PPS_0732	(+)				(mitochondrial)
1042876.PPS_0885				PF02371
1042876.PPS_3858				PF02371
1042876.PPS_0340				(PF06293)
1042876.PPS_0952	+
1042876.PPS_3188		(>)
1042876.PPS_5205	(+)		+
1042876.PPS_5206		+
1042876.PPS_4885	(+)				(mitochondrial)
1042876.PPS_0064	+
1042876.PPS_3742	+
1042876.PPS_5065	+
1042876.PPS_3214	+
1042876.PPS_4151	+
1042876.PPS_2855	+
1042876.PPS_3327			+
1042876.PPS_0061	+
1042876.PPS_2296			+
1042876.PPS_2800	+
1042876.PPS_0300	+
1042876.PPS_0630	(+)				(plastid)
1042876.PPS_3035	(+)		+
1042876.PPS_4502	+
1042876.PPS_2141				PF02371
1042876.PPS_0941	(+)
1042876.PPS_2959	(+)
1042876.PPS_5096	(+)
1042876.PPS_1553	(+)
1042876.PPS_0158	(+)
1042876.PPS_3336	(+)
1042876.PPS_2555	(+)
1042876.PPS_3029	(+)
1042876.PPS_2177	(+)
1042876.PPS_2581	(+)
1042876.PPS_2775	(+)
1042876.PPS_2304	(+)
1042876.PPS_3469	(+)
1042876.PPS_3943	(+)
1042876.PPS_5173	(+)
1042876.PPS_0931	(+)
1042876.PPS_5275	(+)
1042876.PPS_0842	(+)
1042876.PPS_0500	(+)
1042876.PPS_0141	(+)
1042876.PPS_3301	(+)
1042876.PPS_0212	(+)
1042876.PPS_2028	(+)
1042876.PPS_1946	(+)
1042876.PPS_3163	(+)
1042876.PPS_4622	(+)
1042876.PPS_2994	(+)
1042876.PPS_1539	(+)
1042876.PPS_4694	(+)
1042876.PPS_0137	(+)
1042876.PPS_0048	(+)
1042876.PPS_0685	(+)
1042876.PPS_3172	(+)
1042876.PPS_3819	(+)
1042876.PPS_2369	(+)
1042876.PPS_3586	(+)
1042876.PPS_4594	(+)
1042876.PPS_4202	(+)
1042876.PPS_3299	(+)
1042876.PPS_1186	(+)
1042876.PPS_4632	(+)
1042876.PPS_3362	(+)
1042876.PPS_3368	(+)
1042876.PPS_0058	(+)
1042876.PPS_0276	(+)
1042876.PPS_0271	(+)
1042876.PPS_0584	(+)
1042876.PPS_0589	(+)
1042876.PPS_2697	(+)
1042876.PPS_0475	(+)
1042876.PPS_0477	(+)
1042876.PPS_2188	(+)
1042876.PPS_1677	(+)
1042876.PPS_1987	(+)
1042876.PPS_1982	(+)
1042876.PPS_4275	(+)
1042876.PPS_0878	(+)
1042876.PPS_4585	(+)
1042876.PPS_2325	(+)
1042876.PPS_5180	(+)
1042876.PPS_1330	(+)
1042876.PPS_1572	(+)
1042876.PPS_4620	(+)
1042876.PPS_4560	(+)
1042876.PPS_0060	(+)
1042876.PPS_4967	(+)
1042876.PPS_4960	(+)
1042876.PPS_0641	(+)
1042876.PPS_4627	(+)
1042876.PPS_0567	(+)
1042876.PPS_4899	(+)
1042876.PPS_3900	(+)
1042876.PPS_2236	(+)
1042876.PPS_2777	(+)
1042876.PPS_1290	(+)
1042876.PPS_0579	(+)
1042876.PPS_3549	(+)
1042876.PPS_0650	(+)
1042876.PPS_4959	(+)
1042876.PPS_2435	(+)
1042876.PPS_4201	(+)
1042876.PPS_0490	(+)
1042876.PPS_3636	(+)
1042876.PPS_3633	(+)
1042876.PPS_3423	(+)
1042876.PPS_2244	(+)
1042876.PPS_2245	(+)
1042876.PPS_2249	(+)
1042876.PPS_4290	(+)
1042876.PPS_4764	(+)
1042876.PPS_2888	(+)
1042876.PPS_2539	(+)
1042876.PPS_1280	(+)
1042876.PPS_0265	(+)
1042876.PPS_3353	(+)
1042876.PPS_4019	(+)
1042876.PPS_0003	(+)
1042876.PPS_2534	(+)
1042876.PPS_0798	(+)
1042876.PPS_1751	(+)
1042876.PPS_3141	(+)
1042876.PPS_3082	(+)
1042876.PPS_1846	(+)
1042876.PPS_1844	(+)
1042876.PPS_2721	(+)
1042876.PPS_1116	(+)
1042876.PPS_2663	(+)
1042876.PPS_3439	(+)
1042876.PPS_3430	(+)
1042876.PPS_2096	(+)
1042876.PPS_4402	(+)
1042876.PPS_4717	(+)
1042876.PPS_4628	(+)
1042876.PPS_4158	(+)
1042876.PPS_1471	(+)
1042876.PPS_1496	(+)
1042876.PPS_0013	(+)				not used
1042876.PPS_0704	(+)
1042876.PPS_1502	(+)
1042876.PPS_0527	(+)				not used
1042876.PPS_3383	(+)
1042876.PPS_2703	(+)
1042876.PPS_3732	(+)
1042876.PPS_3730	(+)
1042876.PPS_2679	(+)
1042876.PPS_2508	(+)
1042876.PPS_2263	(+)
1042876.PPS_3520	(+)
1042876.PPS_5145	(+)
1042876.PPS_5142	(+)
1042876.PPS_1481	(+)
1042876.PPS_1484	(+)
1042876.PPS_4035	(+)
1042876.PPS_4148	(+)
1042876.PPS_0737	(+)
1042876.PPS_0561	(+)
1042876.PPS_3709	(+)
1042876.PPS_1324	(+)
1042876.PPS_2413	(+)
1042876.PPS_1133	(+)
1042876.PPS_2110	(+)
1042876.PPS_2114	(+)
1042876.PPS_2273	(+)
1042876.PPS_2272	(+)
1042876.PPS_3897	(+)
1042876.PPS_3894	(+)
1042876.PPS_5267	(+)
1042876.PPS_2074	(+)
1042876.PPS_4554	(+)
1042876.PPS_4954	(+)
1042876.PPS_2549	(+)
1042876.PPS_3016	(+)
1042876.PPS_2293	(+)
1042876.PPS_3014	(+)
1042876.PPS_1250	(+)
1042876.PPS_1129	(+)
1042876.PPS_5027	(+)
1042876.PPS_3091	(+)
1042876.PPS_0616	(+)
1042876.PPS_3777	+
1042876.PPS_0605	(+)
1042876.PPS_2492	(+)
1042876.PPS_1810	(+)
1042876.PPS_1451	(+)
1042876.PPS_3883	(+)
1042876.PPS_2822	(+)
1042876.PPS_3031	(+)
1042876.PPS_4183	(+)
1042876.PPS_1025	(+)
1042876.PPS_3245	(+)
1042876.PPS_0758	(+)
1042876.PPS_2440	(+)				not used
1042876.PPS_2446	(+)
1042876.PPS_2598	(+)
1042876.PPS_1931	(+)
1042876.PPS_2139	(+)
1042876.PPS_4280	(+)
1042876.PPS_0623	(+)
1042876.PPS_2605	(+)
1042876.PPS_0970	(+)
1042876.PPS_0979	(+)
1042876.PPS_0296	(+)
1042876.PPS_4663	(+)
1042876.PPS_2837	(+)
1042876.PPS_1230	(+)
1042876.PPS_0298	(+)
1042876.PPS_5045	(+)
1042876.PPS_4068	(+)
1042876.PPS_1560	(+)
1042876.PPS_1565	(+)
1042876.PPS_3145	(+)
1042876.PPS_1160	(+)
1042876.PPS_3194	(+)
1042876.PPS_2458	(+)
1042876.PPS_3691	(+)
1042876.PPS_1909	(+)
1042876.PPS_3467	(+)
1042876.PPS_3465	(+)
1042876.PPS_0980	(+)
1042876.PPS_1364	(+)
1042876.PPS_3513	(+)
1042876.PPS_0960	(+)
1042876.PPS_4675	(+)
1042876.PPS_1342	(+)
1042876.PPS_1228	(+)
1042876.PPS_2802	(+)
1042876.PPS_4075	(+)
1042876.PPS_4077	(+)
1042876.PPS_0083	(+)
1042876.PPS_1175	(+)
1042876.PPS_0177	(+)
1042876.PPS_0319	(+)
1042876.PPS_3683	(+)
1042876.PPS_0550	(+)
1042876.PPS_1915	(+)
1042876.PPS_0746	(+)
1042876.PPS_0884	(+)
1042876.PPS_2811	(+)
1042876.PPS_4642	(+)
1042876.PPS_4577	(+)
1042876.PPS_0709	(+)
1042876.PPS_0784	(+)
1042876.PPS_0540	(+)
1042876.PPS_3140	(+)
1042876.PPS_4245	(+)
1042876.PPS_4543	(+)
1042876.PPS_3840	(+)
1042876.PPS_0893	(+)
1042876.PPS_0706	(+)
1042876.PPS_3927	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.4 (4/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 1.5 (12/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================