Metamenu

Effective results for Weissella koreensis KACC 15510 (eggnog40)

Summary

Number of putative secreted proteins: 9
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 9 proteins (3 high, 6 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1045854.WKK_06615(PF07517) (PF07516) (PF01043)(mitochondrial)
1045854.WKK_00220(PF07517) (PF07516) (PF01043)(mitochondrial)
1045854.WKK_02360(PF07517) (PF07516) (PF01043)
1045854.WKK_00215PF00344(ER); (plastid)
1045854.WKK_02445(PF01697)mitochondrial
1045854.WKK_02620PF00344(mitochondrial)
1045854.WKK_06640PF00344
1045854.WKK_00280(PF06421)
1045854.WKK_01395(PF06421)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================