Effective results for Megasphaera elsdenii DSM 20460 (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 41 proteins (2 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1064535.MELS_2085				(PF14566)	ER
1064535.MELS_1990				(PF01637)	(mitochondrial)
1064535.MELS_0324				PF00349 PF03727
1064535.MELS_0384				PF00349 PF03727
1064535.MELS_2044				(PF10371)
1064535.MELS_1938				(PF13597)
1064535.MELS_1939				(PF13597)
1064535.MELS_1937				(PF13276)
1064535.MELS_1935				(PF09458)
1064535.MELS_1886				(PF13276)
1064535.MELS_0987				(PF10371)
1064535.MELS_0562				(PF09861)
1064535.MELS_1576				(PF01487)
1064535.MELS_0954				(PF01969)
1064535.MELS_0771				(PF13276)
1064535.MELS_0263				(PF01880)
1064535.MELS_1963				(PF04098)
1064535.MELS_0891				(PF13276)
1064535.MELS_1222				(PF13276)
1064535.MELS_0101				(PF09861)
1064535.MELS_1955				(PF13276)
1064535.MELS_2202				(PF13597)
1064535.MELS_1313				(PF04970)
1064535.MELS_0049				(PF13276)
1064535.MELS_0593				(PF13276)
1064535.MELS_0669				(PF01969)
1064535.MELS_0460				(PF01880)
1064535.MELS_1323				(PF08123)
1064535.MELS_1322				(PF04970)
1064535.MELS_0275				(PF01487)
1064535.MELS_0697				(PF01637)
1064535.MELS_0874				(PF01637)
1064535.MELS_0260				(PF10371)
1064535.MELS_2220				(PF09861)
1064535.MELS_1607				(PF13276)
1064535.MELS_0804				(PF13276)
1064535.MELS_0806				(PF12646)
1064535.MELS_0248				(PF09861)
1064535.MELS_2089				(PF13276)
1064535.MELS_0826				(PF02317)
1064535.MELS_0825				(PF02317)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================