Effective results for Thermus sp. CCB_US3_UF1 (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 27 proteins (2 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1111069.TCCBUS3UF1_3930				(PF05168)	(mitochondrial)
1111069.TCCBUS3UF1_10210				PF03351	ER
1111069.TCCBUS3UF1_22220				PF16575	(mitochondrial)
1111069.TCCBUS3UF1_17470				(PF00872)
1111069.TCCBUS3UF1_1830				(PF05168)
1111069.TCCBUS3UF1_13980				(PF00025)
1111069.TCCBUS3UF1_1280				(PF00872)
1111069.TCCBUS3UF1_2500				(PF00872)
1111069.TCCBUS3UF1_7590				(PF04098)
1111069.TCCBUS3UF1_730				(PF00872)
1111069.TCCBUS3UF1_1460				(PF05168)
1111069.TCCBUS3UF1_17300				(PF00872)
1111069.TCCBUS3UF1_18780				(PF00872)
1111069.TCCBUS3UF1_2220				(PF02171)
1111069.TCCBUS3UF1_21410				(PF01875)
1111069.TCCBUS3UF1_17530				(PF00872)
1111069.TCCBUS3UF1_14250				(PF01875)
1111069.TCCBUS3UF1_11500				(PF00872)
1111069.TCCBUS3UF1_17340				(PF00872)
1111069.TCCBUS3UF1_2470				(PF00872)
1111069.TCCBUS3UF1_400				(PF04930)
1111069.TCCBUS3UF1_17350				(PF00872)
1111069.TCCBUS3UF1_1590				(PF00872)
1111069.TCCBUS3UF1_2070				(PF00872)
1111069.TCCBUS3UF1_14870				(PF01991)
1111069.TCCBUS3UF1_1480				(PF05168)
1111069.TCCBUS3UF1_1600				(PF12862)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================