Effective results for Thermus sp. CCB_US3_UF1 (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 27 proteins (2 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1111069.TCCBUS3UF1_3930(PF05168)(mitochondrial)
1111069.TCCBUS3UF1_10210PF03351ER
1111069.TCCBUS3UF1_22220PF16575(mitochondrial)
1111069.TCCBUS3UF1_17470(PF00872)
1111069.TCCBUS3UF1_1830(PF05168)
1111069.TCCBUS3UF1_13980(PF00025)
1111069.TCCBUS3UF1_1280(PF00872)
1111069.TCCBUS3UF1_2500(PF00872)
1111069.TCCBUS3UF1_7590(PF04098)
1111069.TCCBUS3UF1_730(PF00872)
1111069.TCCBUS3UF1_1460(PF05168)
1111069.TCCBUS3UF1_17300(PF00872)
1111069.TCCBUS3UF1_18780(PF00872)
1111069.TCCBUS3UF1_2220(PF02171)
1111069.TCCBUS3UF1_21410(PF01875)
1111069.TCCBUS3UF1_17530(PF00872)
1111069.TCCBUS3UF1_14250(PF01875)
1111069.TCCBUS3UF1_11500(PF00872)
1111069.TCCBUS3UF1_17340(PF00872)
1111069.TCCBUS3UF1_2470(PF00872)
1111069.TCCBUS3UF1_400(PF04930)
1111069.TCCBUS3UF1_17350(PF00872)
1111069.TCCBUS3UF1_1590(PF00872)
1111069.TCCBUS3UF1_2070(PF00872)
1111069.TCCBUS3UF1_14870(PF01991)
1111069.TCCBUS3UF1_1480(PF05168)
1111069.TCCBUS3UF1_1600(PF12862)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================