Metamenu

Effective results for Gordonia polyisoprenivorans VH2 (eggnog40)

Summary

Number of putative secreted proteins: 129
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 129 proteins (4 high, 125 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1112204.GPOL_c04130(PF08310) (PF00756)(mitochondrial)
1112204.GPOL_c42180(PF00756)(ER)
1112204.GPOL_c24800(PF08310)ER
1112204.GPOL_c03080(PF01493) (PF00310) (PF04898)
1112204.GPOL_c44520(PF00756)ER
1112204.GPOL_c09140(PF03583)mitochondrial
1112204.GPOL_c02870(PF06966)ER
1112204.GPOL_c35650(PF01674)(mitochondrial)
1112204.GPOL_c04840(PF02727) (PF01179) (PF02728)
1112204.GPOL_c11030(PF03583)(mitochondrial); plastid
1112204.GPOL_c27020(PF01493) (PF00310) (PF04898)
1112204.GPOL_c04010(PF08310)mitochondrial
1112204.GPOL_c49680(PF06966)ER
1112204.GPOL_c15260(PF00756)mitochondrial
1112204.GPOL_c04920(PF00756)ER
1112204.GPOL_c05030(PF00756)ER
1112204.GPOL_c42920(PF00756)(ER); ER
1112204.GPOL_c44210(PF09995)(mitochondrial)
1112204.GPOL_c48710(PF14269)mitochondrial
1112204.GPOL_c13470(PF03583)ER
1112204.GPOL_c06860(PF03583)(ER); (mitochondrial)
1112204.GPOL_c47750(PF00756)mitochondrial; (mitochondrial)
1112204.GPOL_c36690(PF00756)mitochondrial; (mitochondrial)
1112204.GPOL_c23470(PF00756)(ER)
1112204.GPOL_c17960(PF01493) (PF00310) (PF04898)
1112204.GPOL_c40010(PF03583)ER
1112204.GPOL_c19410(PF03583)mitochondrial
1112204.GPOL_c42400(PF00756)ER
1112204.GPOL_c08650(PF00756)ER
1112204.GPOL_c10380PF08213(mitochondrial)
1112204.GPOL_c46190(PF06966)ER
1112204.GPOL_c03850(PF03583)ER
1112204.GPOL_c31380(PF03583)mitochondrial
1112204.GPOL_c07780(PF01674)ER
1112204.GPOL_c10670(PF02727) (PF01179) (PF02728)
1112204.GPOL_c04410(PF03583)mitochondrial
1112204.GPOL_c13010(PF01674)ER
1112204.GPOL_c48800(PF00391) (PF01326)
1112204.GPOL_c15210(PF00391) (PF01326)
1112204.GPOL_c00610(PF00391) (PF01326)
1112204.GPOL_c43820(PF14226) (PF03171)
1112204.GPOL_c49770(PF14226) (PF03171)
1112204.GPOL_c49790(PF14226) (PF03171)
1112204.GPOL_c43830(PF14226) (PF03171)
1112204.GPOL_c46650(PF14226) (PF03171)
1112204.GPOL_c20720(PF00391) (PF01326)
1112204.GPOL_c18930(PF08354) PF16073
1112204.GPOL_c00550(PF03583)(plastid)
1112204.GPOL_c08920(PF14226) (PF03171)
1112204.GPOL_c00830(PF00391) (PF01326)
1112204.GPOL_c06900(PF14226) (PF03171)
1112204.GPOL_c39840(PF00415)(plastid)
1112204.GPOL_c10980(PF14269)(ER)
1112204.GPOL_c11740(PF09995)plastid
1112204.GPOL_c39300(PF14226) (PF03171)
1112204.GPOL_c24510(PF14226) (PF03171)
1112204.GPOL_c00440(PF11927)(plastid)
1112204.GPOL_c37010(PF09995)(plastid)
1112204.GPOL_c33260(PF01179) (PF02728)
1112204.GPOL_c11250(PF00756)(ER)
1112204.GPOL_c36650(PF09995)
1112204.GPOL_c03050(PF09995)
1112204.GPOL_c45310(PF09995)
1112204.GPOL_c02800(PF01844)
1112204.GPOL_c00420(PF11927)
1112204.GPOL_c00770(PF00391)
1112204.GPOL_c09490(PF07382)
1112204.GPOL_c29190(PF09995)
1112204.GPOL_c31720(PF09995)
1112204.GPOL_c36050(PF00237)
1112204.GPOL_c16870(PF01844)
1112204.GPOL_c12880(PF01326)
1112204.GPOL_c21180(PF00391)
1112204.GPOL_c04290(PF01844)
1112204.GPOL_c45690(PF00756)
1112204.GPOL_c01530(PF03583)
1112204.GPOL_c13560(PF01844)
1112204.GPOL_c00540(PF02732)
1112204.GPOL_c09610(PF01844)
1112204.GPOL_c46580(PF09995)
1112204.GPOL_c08480(PF00237)
1112204.GPOL_c20080(PF00756)
1112204.GPOL_c00480(PF01493)
1112204.GPOL_c04870(PF01844)
1112204.GPOL_c03910(PF01844)
1112204.GPOL_c04470(PF01844)
1112204.GPOL_c04120(PF00756)
1112204.GPOL_c48310(PF09995)
1112204.GPOL_c39670(PF01844)
1112204.GPOL_c13430(PF01443)
1112204.GPOL_c33700(PF01844)
1112204.GPOL_c06640(PF01844)
1112204.GPOL_c26920(PF09995)
1112204.GPOL_c05280(PF09995)
1112204.GPOL_c10230(PF01844)
1112204.GPOL_c12690(PF08310)
1112204.GPOL_c37140(PF01844)
1112204.GPOL_c09870(PF01844)
1112204.GPOL_c06240(PF00756)
1112204.GPOL_c06400(PF01844)
1112204.GPOL_c37560(PF01674)
1112204.GPOL_c24860PF05241
1112204.GPOL_c28760(PF00415)
1112204.GPOL_c38220(PF01844)
1112204.GPOL_c27190(PF00756)
1112204.GPOL_c00680(PF00391)
1112204.GPOL_c35150PF07054
1112204.GPOL_c12670(PF08310)
1112204.GPOL_c09200(PF01844)
1112204.GPOL_c42710(PF01844)
1112204.GPOL_c40400(PF01844)
1112204.GPOL_c29920(PF07382)
1112204.GPOL_c09430(PF01844)
1112204.GPOL_c00790(PF00391)
1112204.GPOL_c11410(PF14885)
1112204.GPOL_c48390(PF01443)
1112204.GPOL_c25830(PF02224)
1112204.GPOL_c05760(PF01844)
1112204.GPOL_c28750(PF00415)
1112204.GPOL_c47910(PF09995)
1112204.GPOL_c43700(PF00756)
1112204.GPOL_c09350(PF00415)
1112204.GPOL_c39280(PF09995)
1112204.GPOL_c38550(PF01844)
1112204.GPOL_c47010(PF02224)
1112204.GPOL_c00750(PF00391)
1112204.GPOL_c46680(PF01844)
1112204.GPOL_c41570(PF00756)
1112204.GPOL_c46750(PF17048)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================