Effective results for Streptococcus macedonicus ACA-DC 198 (eggnog40)

Summary

Number of putative secreted proteins: 143
- Predicted by T4SEpre: 107
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 58 proteins (30 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1116231.SMA_0280			+		ER
1116231.SMA_1823				(PF13276)	(mitochondrial); (plastid)
1116231.SMA_0279			+		ER
1116231.SMA_1528			+		ER
1116231.SMA_0015			+		ER
1116231.SMA_0461			+		mitochondrial
1116231.SMA_1287			+		(mitochondrial); ER
1116231.SMA_1503			+		ER
1116231.SMA_0022				(PF05257)	ER
1116231.SMA_1745			+		ER
1116231.SMA_0907				PF01610	(mitochondrial)
1116231.SMA_1956			+		(mitochondrial)
1116231.SMA_1300				(PF05257)	ER
1116231.SMA_2084			+		ER
1116231.SMA_1403			+		ER
1116231.SMA_2009			+		ER
1116231.SMA_1465				(PF03714)	mitochondrial
1116231.SMA_1691			+		ER
1116231.SMA_1479			+		ER
1116231.SMA_1330			+		ER
1116231.SMA_0501			+		(mitochondrial)
1116231.SMA_1819			+		(mitochondrial)
1116231.SMA_1500			+		(ER)
1116231.SMA_2069				(PF05495)	(plastid)
1116231.SMA_0809			+		(ER)
1116231.SMA_1975				(PF13276)	(plastid)
1116231.SMA_0583			+		(mitochondrial)
1116231.SMA_1766			+		(plastid)
1116231.SMA_1146			+		(ER)
1116231.SMA_1913				(PF13276)	(plastid)
1116231.SMA_1260			+		(ER)
1116231.SMA_0676				(PF13276)	(mitochondrial)
1116231.SMA_0075			+
1116231.SMA_0078				PF01610	not used
1116231.SMA_0079				PF01610
1116231.SMA_1254			+		not used
1116231.SMA_0443			+
1116231.SMA_0289			+
1116231.SMA_1535			+
1116231.SMA_0069			+
1116231.SMA_0475			+
1116231.SMA_0724			+
1116231.SMA_0874				PF01610	not used
1116231.SMA_0872				PF01610	not used
1116231.SMA_0873				PF01610
1116231.SMA_0366			+
1116231.SMA_0018				PF01610
1116231.SMA_0017				PF01610	not used
1116231.SMA_1739			+
1116231.SMA_1733				PF01610
1116231.SMA_1603			+
1116231.SMA_1601				PF01610
1116231.SMA_1514			+
1116231.SMA_0549				(PF02065)
1116231.SMA_0136				PF01610
1116231.SMA_0138			+
1116231.SMA_1351				(PF13276)
1116231.SMA_0255			+
1116231.SMA_1723				(PF13936)
1116231.SMA_1507			+
1116231.SMA_0518				(PF13936)
1116231.SMA_0923				(PF13936)
1116231.SMA_0818			+
1116231.SMA_0756			+
1116231.SMA_1578				PF01610
1116231.SMA_0115			+
1116231.SMA_1372			+
1116231.SMA_0560			+
1116231.SMA_0562			+
1116231.SMA_2180			+
1116231.SMA_0908				PF01610
1116231.SMA_1563			+		not used
1116231.SMA_1989				PF01610	not used
1116231.SMA_1364				(PF13276)
1116231.SMA_1367				(PF13936)
1116231.SMA_1366			+
1116231.SMA_0681				(PF13936)
1116231.SMA_1419				(PF05257)
1116231.SMA_1796				PF01610
1116231.SMA_0916				PF01610
1116231.SMA_0216				(PF02065)
1116231.SMA_2092			+
1116231.SMA_1096				PF01610
1116231.SMA_0548			+
1116231.SMA_1784				PF01610
1116231.SMA_1544			+
1116231.SMA_1547			+
1116231.SMA_2140			+
1116231.SMA_0373			+
1116231.SMA_1234			+
1116231.SMA_0551				(PF02065)
1116231.SMA_0550				(PF02065)
1116231.SMA_0555			+
1116231.SMA_1936				PF01610	not used
1116231.SMA_1845				PF01610
1116231.SMA_1208			+
1116231.SMA_0410			+
1116231.SMA_0523			+
1116231.SMA_2015				(PF05257)
1116231.SMA_0634			+
1116231.SMA_0720				PF01610
1116231.SMA_0638			+
1116231.SMA_1459				PF01610
1116231.SMA_1456			+
1116231.SMA_1453				(PF13276)
1116231.SMA_1326				(PF13276)
1116231.SMA_1859				PF01610
1116231.SMA_0689				PF01610	not used
1116231.SMA_0313			+
1116231.SMA_1046			+
1116231.SMA_2004			+
1116231.SMA_2000			+
1116231.SMA_2170			+
1116231.SMA_1464				(PF03714)
1116231.SMA_0954				PF01610
1116231.SMA_0082				(PF13936)
1116231.SMA_1919			+
1116231.SMA_1862			+
1116231.SMA_0321			+
1116231.SMA_1121				(PF13276)
1116231.SMA_0433				PF01610
1116231.SMA_2106			+
1116231.SMA_1673			+
1116231.SMA_0982				PF01610
1116231.SMA_0188				(PF02065)	not used
1116231.SMA_1901			+
1116231.SMA_1903			+
1116231.SMA_0051			+
1116231.SMA_0333			+
1116231.SMA_1275			+
1116231.SMA_1068				PF01610
1116231.SMA_2117			+
1116231.SMA_0994			+
1116231.SMA_0996			+
1116231.SMA_1801			+
1116231.SMA_0297			+
1116231.SMA_0294				PF01610
1116231.SMA_0299			+
1116231.SMA_1079			+
1116231.SMA_2123			+
1116231.SMA_2120			+
1116231.SMA_0706				(PF13276)
1116231.SMA_0855				PF02916

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================