Effective results for Escherichia coli O157:H7 str. EDL933 (eggnog40)
Summary
Number of putative secreted proteins: 794
- Predicted by EffectiveT3: 209 (high confidence), 299 (low confidence)
- Predicted by EffectiveCCBD: 33 within, 23 before, 32 behind expected region 25..70aa
- Predicted by T4SEpre: 101
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 144 proteins (15 high, 129 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 155864.Z1158 | + | (PF03050) | (mitochondrial); mitochondrial | ||
| 155864.Z1597 | + | (PF03050) | (mitochondrial); mitochondrial | ||
| 155864.Z2100 | (>) | + | ER | ||
| 155864.Z1397 | (PF00328) | (ER) | |||
| 155864.Z2120 | PF00959 | (ER); ER | |||
| 155864.Z2438 | + | ER | |||
| 155864.Z1293m | (PF00345) | (mitochondrial) | |||
| 155864.Z5492 | (PF05708) | ER | |||
| 155864.Z5491 | (+) | (PF03400) | (mitochondrial) | ||
| 155864.Z3037 | + | ER; (ER) | |||
| 155864.Z1811 | (PF13927) | mitochondrial; (plastid) | |||
| 155864.Z1819 | (PF14464) | (mitochondrial) | |||
| 155864.Z1564 | (PF13148) | (mitochondrial); mitochondrial | |||
| 155864.Z0453 | + | ER | |||
| 155864.Z2603 | + | ER | |||
| 155864.Z2300 | + | ER | |||
| 155864.Z3770 | + | ER | |||
| 155864.Z0151 | (PF00345) | mitochondrial; (mitochondrial) | |||
| 155864.Z1604 | (>) | mitochondrial | |||
| 155864.Z2963 | (PF03222) | ER; (ER) | |||
| 155864.Z4815 | + | ER | |||
| 155864.Z4819 | (>) | ER | |||
| 155864.Z4499 | (PF00345) | ER | |||
| 155864.Z5030 | + | (ER) | |||
| 155864.Z1726 | + | (mitochondrial) | |||
| 155864.Z1617 | + | ER | |||
| 155864.Z4392 | + | ER | |||
| 155864.Z4808 | + | mitochondrial; (mitochondrial) | |||
| 155864.Z2083 | + | ER | |||
| 155864.Z1534 | (PF00345) | ER | |||
| 155864.Z1537 | (PF00345) | ER | |||
| 155864.Z3757 | + | ER | |||
| 155864.Z3599 | (PF00345) | (mitochondrial); (plastid) | |||
| 155864.Z1287 | (+) | (PF00345) | ER | ||
| 155864.L7057 | + | mitochondrial | |||
| 155864.Z2985 | + | ER | |||
| 155864.Z0210 | + | ER | |||
| 155864.Z4130 | + | ER | |||
| 155864.Z5359 | + | ER | |||
| 155864.Z2371 | PF00959 | ER | |||
| 155864.Z2201 | (PF00345) | ER | |||
| 155864.Z0023 | (PF00345) | ER | |||
| 155864.Z1464 | PF00161 | ER | |||
| 155864.Z1469 | PF00959 | ER | |||
| 155864.Z0205 | (PF05708) | ER | |||
| 155864.Z3344 | PF00161 | ER | |||
| 155864.Z3831 | + | (ER) | |||
| 155864.Z0908 | + | ER | |||
| 155864.Z0473 | (>) | ER | |||
| 155864.Z0565 | (>) | ER | |||
| 155864.Z3339 | PF00959 | ER | |||
| 155864.Z3487 | (PF02415) | ER; (ER) | |||
| 155864.Z5147 | + | ER | |||
| 155864.Z0688 | (PF00345) | ER | |||
| 155864.Z0869 | (PF00345) | ER | |||
| 155864.Z1796 | PF00959 | ER | |||
| 155864.Z4197 | (<) | ER | |||
| 155864.Z5143 | + | ER | |||
| 155864.Z6062 | + | ER | |||
| 155864.Z5782 | + | ER | |||
| 155864.Z0211 | + | mitochondrial | |||
| 155864.Z2816 | + | (mitochondrial) | |||
| 155864.Z1125 | (PF13148) | (mitochondrial); mitochondrial | |||
| 155864.Z5131 | (<) | ER | |||
| 155864.Z5224 | (PF00345) | ER | |||
| 155864.Z6051 | PF00959 | ER | |||
| 155864.Z3861 | + | ER | |||
| 155864.Z0062 | (<) | ER | |||
| 155864.Z1421 | (PF00328) | ER | |||
| 155864.Z3689 | + | ER | |||
| 155864.Z0888 | (<) | ER | |||
| 155864.Z1336 | (+) | (<) | (ER) | ||
| 155864.Z2720 | (>) | (ER) | |||
| 155864.Z4433 | (PF01204) | ER | |||
| 155864.Z5439 | + | ER | |||
| 155864.Z4849 | + | ER | |||
| 155864.Z4347 | (<) | (ER) | |||
| 155864.Z4556 | + | ER | |||
| 155864.Z5689 | (>) | ER | |||
| 155864.Z5204 | (PF03222) | (ER) | |||
| 155864.Z4330 | + | (mitochondrial) | |||
| 155864.Z6037 | (PF13927) | mitochondrial; (plastid) | |||
| 155864.Z2267 | + | (mitochondrial); ER | |||
| 155864.Z5061 | + | (mitochondrial) | |||
| 155864.Z1352 | PF00959 | ER | |||
| 155864.Z1178 | + | ER | |||
| 155864.Z4522 | (PF03222) | (ER); ER | |||
| 155864.Z0989 | + | (mitochondrial) | |||
| 155864.Z3434 | + | (ER); ER | |||
| 155864.Z1343 | + | ER | |||
| 155864.Z1908 | (PF13927) | mitochondrial | |||
| 155864.Z1165 | (>) | mitochondrial | |||
| 155864.Z4995 | + | ER | |||
| 155864.Z2595 | + | ER | |||
| 155864.Z2849 | + | ER | |||
| 155864.Z0190 | (>) | ER | |||
| 155864.Z0642 | + | ER | |||
| 155864.Z3150 | + | ER | |||
| 155864.Z3717 | (PF10662) | (mitochondrial) | |||
| 155864.Z4457 | (>) | (mitochondrial) | |||
| 155864.Z2943 | + | (mitochondrial) | |||
| 155864.Z1565 | (PF13148) | (ER) | |||
| 155864.Z5646 | (>) | (mitochondrial) | |||
| 155864.Z1034 | (+) | (mitochondrial) | |||
| 155864.Z5801 | + | + | |||
| 155864.Z4468 | + | (PF03222) | |||
| 155864.Z2428 | + | (<) | |||
| 155864.Z5029 | + | (mitochondrial) | |||
| 155864.Z4972 | (+) | (ER) | |||
| 155864.Z5923 | + | (plastid) | |||
| 155864.Z1607 | (+) | ER | |||
| 155864.L7031 | (PF10462) | (mitochondrial) | |||
| 155864.Z2143 | (+) | (PF14464) | plastid | ||
| 155864.Z1171 | + | (plastid) | |||
| 155864.Z0013 | (+) | ER | |||
| 155864.Z4986 | (<) | ||||
| 155864.Z1610 | + | (plastid) | |||
| 155864.Z4667 | + | (mitochondrial) | |||
| 155864.Z3529 | + | (PF02902) | |||
| 155864.Z3577 | (+) | (mitochondrial) | |||
| 155864.Z2885 | (+) | mitochondrial; (mitochondrial) | |||
| 155864.Z5527 | (+) | mitochondrial | |||
| 155864.Z4343 | + | (mitochondrial) | |||
| 155864.Z4908 | + | (plastid) | |||
| 155864.Z2509 | (+) | ER | |||
| 155864.Z3968 | + | (mitochondrial) | |||
| 155864.Z1183 | + | (plastid) | |||
| 155864.Z5993 | (>) | (mitochondrial) | |||
| 155864.Z5231 | (<) | + | |||
| 155864.Z0930 | + | (mitochondrial) | |||
| 155864.Z1516 | + | + | |||
| 155864.Z0020 | + | (plastid) | |||
| 155864.Z5759 | + | (mitochondrial) | |||
| 155864.Z4100 | (+) | (mitochondrial) | |||
| 155864.Z5186 | + | (plastid) | |||
| 155864.Z5503 | (+) | (mitochondrial) | |||
| 155864.Z3578 | + | (mitochondrial) | |||
| 155864.Z2525 | + | (plastid) | |||
| 155864.Z1096 | + | plastid | |||
| 155864.Z2681 | + | (mitochondrial) | |||
| 155864.Z0040 | + | (ER) | |||
| 155864.Z3067 | (+) | (mitochondrial) | |||
| 155864.Z3464 | + | + | |||
| 155864.Z4165 | (+) | (PF03222) | (ER) | ||
| 155864.Z1139 | + | (mitochondrial) | |||
| 155864.Z5140 | + | (mitochondrial) | |||
| 155864.Z5781 | + | + | |||
| 155864.Z3672 | + | plastid | |||
| 155864.Z0892 | (PF05034) (PF07476) | ||||
| 155864.Z4310 | (>) | (ER) | |||
| 155864.Z1126 | (PF13148) | (ER) | |||
| 155864.Z5953 | + | (ER) | |||
| 155864.Z5045 | + | PF09612 | |||
| 155864.Z2338 | + | plastid | |||
| 155864.Z1622 | + | (plastid) | |||
| 155864.Z1112 | + | (plastid) | |||
| 155864.Z5306 | + | (ER) | |||
| 155864.Z4328 | + | (plastid) | |||
| 155864.Z5113 | (+) | mitochondrial | |||
| 155864.Z5788 | + | + | |||
| 155864.Z0443 | (+) | (mitochondrial) | |||
| 155864.Z4631 | (+) | mitochondrial; (mitochondrial) | |||
| 155864.Z4458 | + | (mitochondrial) | |||
| 155864.Z5100 | (+) | mitochondrial; (mitochondrial) | |||
| 155864.Z5450 | (<) | (plastid) | |||
| 155864.Z3853 | (+) | ER | |||
| 155864.Z6021 | + | (mitochondrial) | |||
| 155864.Z1168 | (+) | ER | |||
| 155864.Z5668 | + | + | |||
| 155864.Z4994 | + | (mitochondrial) | |||
| 155864.Z5107 | + | + | |||
| 155864.L7081 | + | (plastid) | |||
| 155864.Z1578 | + | (mitochondrial) | |||
| 155864.Z1157 | + | not used | |||
| 155864.Z1152 | (PF01197) | ||||
| 155864.Z1150 | (PF01527) | ||||
| 155864.Z1398 | + | ||||
| 155864.Z1390 | + | ||||
| 155864.Z4507 | + | ||||
| 155864.Z4057 | + | ||||
| 155864.Z4502 | (PF01527) | ||||
| 155864.L7019 | (PF13276) | ||||
| 155864.Z4058 | + | ||||
| 155864.Z5879 | (PF01527) | ||||
| 155864.Z4872 | (+) | (plastid) | |||
| 155864.Z4876 | (+) | (plastid) | |||
| 155864.Z2616 | (+) | (<) | |||
| 155864.Z5471 | + | ||||
| 155864.Z2437 | + | ||||
| 155864.Z0033 | + | ||||
| 155864.Z2056 | + | ||||
| 155864.Z2051 | + | ||||
| 155864.Z2059 | (+) | plastid | |||
| 155864.Z2544 | + | ||||
| 155864.Z4505 | + | ||||
| 155864.Z0964 | + | ||||
| 155864.Z0960 | PF00959 | ||||
| 155864.Z3093 | (PF01527) | ||||
| 155864.Z1818 | PF10548 | ||||
| 155864.Z1562 | (PF03400) | ||||
| 155864.Z3704 | (>) | ||||
| 155864.Z1968 | (PF01204) | ||||
| 155864.Z1709 | + | ||||
| 155864.Z1639 | (PF01527) | ||||
| 155864.Z1632 | (PF03400) | ||||
| 155864.Z4286 | + | ||||
| 155864.Z1385 | + | ||||
| 155864.Z5641 | + | ||||
| 155864.Z4605 | + | ||||
| 155864.Z2429 | (PF01527) | ||||
| 155864.Z5736 | + | ||||
| 155864.Z2041 | + | ||||
| 155864.Z2049 | + | ||||
| 155864.Z2048 | + | ||||
| 155864.Z2558 | + | not used | |||
| 155864.Z3951 | + | not used | |||
| 155864.Z2130 | (PF03050) | ||||
| 155864.Z0978 | (PF14464) | ||||
| 155864.Z3393 | + | ||||
| 155864.Z3176 | + | ||||
| 155864.Z1826 | (PF01527) | not used | |||
| 155864.Z1825 | (PF13276) | ||||
| 155864.Z1957 | (PF13276) | ||||
| 155864.Z1951 | + | ||||
| 155864.Z1958 | (PF01527) | ||||
| 155864.Z0397 | (+) | (mitochondrial) | |||
| 155864.Z0212 | + | ||||
| 155864.Z3162 | (PF13276) | ||||
| 155864.Z1600 | (PF03050) | ||||
| 155864.Z1601 | (PF03050) | ||||
| 155864.Z4703 | (+) | (mitochondrial) | |||
| 155864.Z5699 | (+) | (mitochondrial) | |||
| 155864.Z5813 | (+) | (mitochondrial) | |||
| 155864.Z5655 | (+) | (mitochondrial) | |||
| 155864.Z4929 | (>) | ||||
| 155864.Z2701 | + | ||||
| 155864.Z2094 | + | ||||
| 155864.Z1933 | (PF01527) | ||||
| 155864.Z3943 | (>) | ||||
| 155864.Z3545 | + | ||||
| 155864.Z1175 | (+) | (plastid) | |||
| 155864.Z1177 | + | ||||
| 155864.Z3686 | + | ||||
| 155864.Z3165 | (+) | (ER) | |||
| 155864.Z3167 | (PF10662) | ||||
| 155864.Z3161 | (PF01527) | ||||
| 155864.Z1721 | + | ||||
| 155864.Z1720 | + | ||||
| 155864.Z1727 | + | ||||
| 155864.Z3614 | + | ||||
| 155864.Z0111 | + | ||||
| 155864.Z1614 | (+) | (plastid) | |||
| 155864.Z1616 | + | ||||
| 155864.Z1612 | + | ||||
| 155864.Z0233 | + | ||||
| 155864.L7045 | (PF01527) | ||||
| 155864.Z1687 | + | not used | |||
| 155864.Z4395 | (PF03738) | ||||
| 155864.Z5282 | + | ||||
| 155864.Z2628 | + | ||||
| 155864.Z4481 | + | ||||
| 155864.Z2399 | (+) | (plastid) | |||
| 155864.Z4939 | (<) | ||||
| 155864.Z4932 | (PF01204) | ||||
| 155864.Z2717 | (>) | ||||
| 155864.Z0532 | + | ||||
| 155864.Z2082 | + | ||||
| 155864.Z3618 | (+) | + | |||
| 155864.Z3976 | + | ||||
| 155864.Z2402 | PF14555 | not used | |||
| 155864.Z2156 | + | ||||
| 155864.Z0715 | + | ||||
| 155864.Z2970 | + | ||||
| 155864.Z0951 | (PF09588) | ||||
| 155864.Z1531 | + | ||||
| 155864.Z3026 | + | ||||
| 155864.Z0487 | + | ||||
| 155864.Z1848 | + | ||||
| 155864.Z1192 | (PF03400) | ||||
| 155864.Z1661 | (PF01527) | ||||
| 155864.Z1191 | + | ||||
| 155864.Z1199 | (PF01527) | ||||
| 155864.L7056 | + | ||||
| 155864.Z0334 | + | ||||
| 155864.Z1260 | (+) | + | |||
| 155864.Z4122 | + | ||||
| 155864.Z5106 | + | ||||
| 155864.Z4128 | + | ||||
| 155864.Z5526 | (>) | ||||
| 155864.Z4340 | (PF03050) | ||||
| 155864.Z4342 | (PF03738) | ||||
| 155864.Z4905 | + | ||||
| 155864.Z4246 | + | ||||
| 155864.Z2878m | + | ||||
| 155864.Z3367 | (PF09588) | ||||
| 155864.Z1363 | + | ||||
| 155864.Z0728 | + | ||||
| 155864.Z2981 | (PF13276) | ||||
| 155864.Z2982 | (PF01527) | ||||
| 155864.Z3431 | + | ||||
| 155864.Z2988 | (<) | not used | |||
| 155864.Z3297 | (PF13276) | ||||
| 155864.Z3299 | (PF01527) | ||||
| 155864.Z0586 | + | ||||
| 155864.Z6020 | + | ||||
| 155864.Z3583 | + | ||||
| 155864.Z1456 | (>) | ||||
| 155864.Z0103 | + | ||||
| 155864.Z3639 | + | ||||
| 155864.L7069 | + | ||||
| 155864.L7066 | (PF01527) | ||||
| 155864.L7065 | (PF13276) | ||||
| 155864.L7061 | + | ||||
| 155864.Z5121 | + | ||||
| 155864.Z4359 | (>) | ||||
| 155864.Z0266 | + | ||||
| 155864.Z5608 | + | ||||
| 155864.Z2375 | (PF01527) | ||||
| 155864.Z2176 | + | ||||
| 155864.Z2178 | + | ||||
| 155864.Z2196 | + | ||||
| 155864.Z4487 | + | ||||
| 155864.Z5543 | + | ||||
| 155864.Z4329 | + | ||||
| 155864.Z2993 | + | ||||
| 155864.Z2992 | + | ||||
| 155864.Z0119 | + | ||||
| 155864.Z1460 | (<) | not used | |||
| 155864.Z1467 | (+) | (plastid) | |||
| 155864.Z1468 | + | ||||
| 155864.Z0596 | + | ||||
| 155864.Z4936 | + | ||||
| 155864.Z1882 | (<) | ||||
| 155864.Z0203 | + | ||||
| 155864.L7072 | + | ||||
| 155864.Z4582 | + | ||||
| 155864.Z4105 | + | ||||
| 155864.Z2698 | (+) | (plastid) | |||
| 155864.Z5164 | + | ||||
| 155864.Z2659 | (+) | (ER) | |||
| 155864.Z2308 | + | ||||
| 155864.Z6080 | (PF16473) | ||||
| 155864.Z0429 | (<) | ||||
| 155864.Z3902 | + | ||||
| 155864.Z3900 | (+) | + | |||
| 155864.Z3341 | (+) | (plastid) | |||
| 155864.Z2235 | + | ||||
| 155864.Z3838 | + | ||||
| 155864.Z3123 | + | ||||
| 155864.Z4848 | + | ||||
| 155864.Z1503 | (+) | PF10548 | |||
| 155864.Z0690 | (+) | plastid | |||
| 155864.Z2838 | + | ||||
| 155864.Z2839 | + | ||||
| 155864.Z1479 | + | ||||
| 155864.Z1876 | PF00959 | ||||
| 155864.Z1652 | + | ||||
| 155864.Z4591 | + | ||||
| 155864.Z0448 | (>) | ||||
| 155864.Z4118 | + | ||||
| 155864.Z4113 | + | ||||
| 155864.Z4379 | (+) | (mitochondrial) | |||
| 155864.Z2682 | + | ||||
| 155864.Z5400 | + | ||||
| 155864.Z5402 | + | ||||
| 155864.Z5088 | (PF01527) | ||||
| 155864.Z5082 | + | ||||
| 155864.Z2938 | (+) | plastid | |||
| 155864.Z4740 | + | ||||
| 155864.Z5794 | + | ||||
| 155864.Z5792 | + | ||||
| 155864.Z5793 | (PF03738) | ||||
| 155864.Z2351 | (PF14464) | ||||
| 155864.Z3242 | (+) | ER; not used | |||
| 155864.Z0043 | + | ||||
| 155864.Z0681 | + | ||||
| 155864.L7097 | (PF01527) | ||||
| 155864.L7099 | + | ||||
| 155864.Z4567 | + | ||||
| 155864.Z1221 | (PF13276) | ||||
| 155864.Z1222 | (PF01527) | ||||
| 155864.Z4163 | (+) | + | |||
| 155864.Z4053 | (>) | ||||
| 155864.Z3447 | (+) | (ER) | |||
| 155864.Z1134 | (+) | (PF13276) | |||
| 155864.Z1131 | (PF03050) | ||||
| 155864.Z4767 | + | ||||
| 155864.Z5893 | (<) | ||||
| 155864.Z3920 | + | ||||
| 155864.Z5966 | (>) | ||||
| 155864.Z5098 | (PF03050) | ||||
| 155864.Z5091 | + | ||||
| 155864.Z5096 | (+) | (PF01527) | |||
| 155864.Z2037 | (PF16473) | ||||
| 155864.Z3922 | (PF01527) | ||||
| 155864.Z2734 | + | ||||
| 155864.Z2253 | + | ||||
| 155864.Z3819 | + | ||||
| 155864.Z3028 | (+) | (mitochondrial) | |||
| 155864.Z0001 | + | not used | |||
| 155864.Z3496 | + | ||||
| 155864.Z2255 | + | not used | |||
| 155864.Z3750 | (+) | (plastid) | |||
| 155864.Z0675 | (+) | (plastid) | |||
| 155864.Z3071 | (+) | + | |||
| 155864.Z0678 | (+) | (<) | |||
| 155864.Z1419 | + | ||||
| 155864.Z5914 | (PF00345) | ||||
| 155864.Z3679 | (+) | (mitochondrial) | |||
| 155864.Z0412 | + | ||||
| 155864.Z5663 | + | ||||
| 155864.Z0890 | (PF14330) | ||||
| 155864.Z0898 | + | ||||
| 155864.Z1480 | (+) | (plastid) | |||
| 155864.Z1781 | + | ||||
| 155864.Z2730 | + | ||||
| 155864.Z5706 | + | ||||
| 155864.Z0328 | + | ||||
| 155864.Z4172 | (PF07720) | ||||
| 155864.Z4176 | + | ||||
| 155864.Z4174 | + | ||||
| 155864.Z3950 | + | ||||
| 155864.Z4317 | (PF03050) | ||||
| 155864.Z4315 | (PF01527) | ||||
| 155864.Z2442 | + | ||||
| 155864.Z1123 | (PF03400) | ||||
| 155864.Z0851 | (+) | (mitochondrial) | |||
| 155864.Z4959 | + | ||||
| 155864.Z5956 | + | ||||
| 155864.Z4799 | + | ||||
| 155864.Z6054 | + | ||||
| 155864.Z2335 | + | ||||
| 155864.Z3314 | (PF14464) | ||||
| 155864.Z2240 | + | ||||
| 155864.Z2245 | (<) | ||||
| 155864.Z3269 | + | ||||
| 155864.Z1715 | + | ||||
| 155864.Z0660 | + | ||||
| 155864.Z2804 | (PF01527) | ||||
| 155864.Z2803 | + | ||||
| 155864.Z1420 | + | ||||
| 155864.Z3440 | (+) | (mitochondrial) | |||
| 155864.Z0249 | (+) | (mitochondrial) | |||
| 155864.Z0248 | + | ||||
| 155864.Z0241 | + | ||||
| 155864.Z0247 | + | ||||
| 155864.Z0246 | + | ||||
| 155864.Z1212 | + | ||||
| 155864.Z1216 | + | ||||
| 155864.Z4541 | + | ||||
| 155864.Z4545 | + | ||||
| 155864.Z0078 | + | ||||
| 155864.Z1208 | (PF01527) | ||||
| 155864.Z0345 | + | not used | |||
| 155864.Z4992 | + | ||||
| 155864.Z0304 | (>) | ||||
| 155864.Z5122 | + | ||||
| 155864.Z5127 | (PF07720) | ||||
| 155864.Z5945 | + | ||||
| 155864.Z5052 | (PF06176) | ||||
| 155864.Z5050 | + | ||||
| 155864.Z2491 | + | ||||
| 155864.Z0313 | + | ||||
| 155864.Z0303 | (>) | ||||
| 155864.Z4191 | + | ||||
| 155864.Z3055 | + | ||||
| 155864.Z5112 | + | ||||
| 155864.Z1431 | + | ||||
| 155864.Z1435 | (PF09588) | ||||
| 155864.Z1929 | (PF03050) | ||||
| 155864.Z0109 | (<) | ||||
| 155864.Z0508 | (>) | ||||
| 155864.Z0348 | + | ||||
| 155864.Z5292 | + | not used | |||
| 155864.Z0897 | + | ||||
| 155864.Z1106 | + | ||||
| 155864.Z4425 | + | ||||
| 155864.Z4421 | + | ||||
| 155864.Z4338 | + | ||||
| 155864.Z4335 | (PF01527) | ||||
| 155864.Z4337 | (PF03050) | ||||
| 155864.Z1425 | + | ||||
| 155864.Z5840 | (+) | (ER) | |||
| 155864.Z5849 | + | ||||
| 155864.Z2521 | + | ||||
| 155864.Z0533 | + | ||||
| 155864.Z6032 | (PF14464) | ||||
| 155864.Z6034 | (+) | (plastid) | |||
| 155864.Z5954 | + | ||||
| 155864.Z3609 | + | ||||
| 155864.Z4887 | + | ||||
| 155864.Z2263 | + | not used | |||
| 155864.Z0645 | + | ||||
| 155864.Z2862 | + | ||||
| 155864.Z1913 | (+) | (plastid) | |||
| 155864.Z0421 | + | ||||
| 155864.Z2914 | (PF05708) | ||||
| 155864.Z1596 | + | not used | |||
| 155864.Z0444 | + | ||||
| 155864.Z1591 | (PF01197) | ||||
| 155864.Z1387 | + | ||||
| 155864.Z1774 | + | ||||
| 155864.Z0354 | + | ||||
| 155864.Z1000 | (<) | ||||
| 155864.Z0059 | + | ||||
| 155864.Z4181 | + | ||||
| 155864.L7095 | + | ||||
| 155864.Z1173 | + | ||||
| 155864.Z1509 | (+) | (ER) | |||
| 155864.Z1412 | (>) | ||||
| 155864.Z5211 | (>) | ||||
| 155864.Z5446 | + | ||||
| 155864.Z1001 | + | ||||
| 155864.Z4621 | + | ||||
| 155864.Z5103 | + | ||||
| 155864.Z5105 | + | ||||
| 155864.Z5104 | + | ||||
| 155864.Z5455 | + | ||||
| 155864.Z3983 | + | ||||
| 155864.Z2452 | + | ||||
| 155864.Z3691 | (>) | ||||
| 155864.Z3851 | (>) | ||||
| 155864.Z2079 | (PF03050) | ||||
| 155864.Z6024 | + | ||||
| 155864.Z3210 | (>) | ||||
| 155864.Z2296 | (PF07063) | ||||
| 155864.Z2297 | (PF07063) | ||||
| 155864.Z2298 | (+) | (PF07063) | |||
| 155864.Z0985 | + | ||||
| 155864.Z3184 | + | ||||
| 155864.Z0743 | + | ||||
| 155864.Z1631 | + | ||||
| 155864.Z1589 | (PF01527) | ||||
| 155864.Z5935 | + | ||||
| 155864.Z2002 | (<) | ||||
| 155864.Z1766 | (PF16473) | ||||
| 155864.Z0367 | (PF03050) | ||||
| 155864.Z0364 | (PF01197) | ||||
| 155864.Z0365 | (+) | (PF01527) | |||
| 155864.Z1746 | + | ||||
| 155864.Z1162 | (PF03050) | ||||
| 155864.Z1161 | (PF03050) | ||||
| 155864.L7009 | + | ||||
| 155864.L7006 | + | ||||
| 155864.Z4530 | (<) | ||||
| 155864.Z5138 | + | ||||
| 155864.Z2660 | (+) | (mitochondrial) | |||
| 155864.Z2110 | (PF01527) | ||||
| 155864.Z5484 | (PF01197) | ||||
| 155864.Z6016 | (PF03050) | ||||
| 155864.Z6014 | (+) | (PF01527) | |||
| 155864.Z6011 | + | ||||
| 155864.Z1656 | + | ||||
| 155864.Z2845 | + | ||||
| 155864.Z3154 | (+) | (PF01527) | |||
| 155864.Z3156 | (PF03050) | ||||
| 155864.Z5656 | + | ||||
| 155864.L7083 | + | ||||
| 155864.Z0177 | + | ||||
| 155864.Z1570 | (PF03050) | ||||
| 155864.Z1573 | (+) | (PF13276) | |||
| 155864.Z3710 | + | ||||
| 155864.Z4514 | + | ||||
| 155864.Z1970 | + | ||||
| 155864.L7064 | (+) | (plastid) | |||
| 155864.Z1716 | + | ||||
| 155864.Z0175 | + | ||||
| 155864.Z1391 | (+) | ||||
| 155864.L7014 | (+) | ||||
| 155864.Z4059 | (+) | ||||
| 155864.L7010 | (+) | ||||
| 155864.Z1024 | (+) | ||||
| 155864.Z2047 | (+) | ||||
| 155864.Z5014 | (+) | ||||
| 155864.Z4874 | (+) | ||||
| 155864.Z5477 | (+) | ||||
| 155864.Z4473 | (+) | ||||
| 155864.Z5704 | (+) | ||||
| 155864.Z5700 | (+) | ||||
| 155864.Z2709 | (+) | ||||
| 155864.Z2729 | (+) | ||||
| 155864.Z3097 | (+) | ||||
| 155864.Z3707 | (+) | ||||
| 155864.Z4040 | (+) | ||||
| 155864.L7021 | (+) | not used | |||
| 155864.Z4207 | (+) | ||||
| 155864.Z4460 | (+) | ||||
| 155864.Z2421 | (+) | ||||
| 155864.Z5025 | (+) | ||||
| 155864.Z0607 | (+) | ||||
| 155864.Z0606 | (+) | ||||
| 155864.Z1823 | (+) | ||||
| 155864.Z1829 | (+) | ||||
| 155864.Z0399 | (+) | ||||
| 155864.Z5335 | (+) | ||||
| 155864.Z1042 | (+) | ||||
| 155864.Z4492 | (+) | ||||
| 155864.Z3711 | (+) | ||||
| 155864.Z3382 | (+) | ||||
| 155864.Z3385 | (+) | ||||
| 155864.Z3890 | (+) | ||||
| 155864.Z0019 | (+) | ||||
| 155864.Z3767 | (+) | not used | |||
| 155864.Z0491 | (+) | ||||
| 155864.Z1619 | (+) | ||||
| 155864.L7048 | (+) | ||||
| 155864.Z4665 | (+) | ||||
| 155864.Z4805 | (+) | ||||
| 155864.Z2620 | (+) | ||||
| 155864.Z3809 | (+) | ||||
| 155864.Z4483 | (+) | ||||
| 155864.Z5623 | (+) | ||||
| 155864.Z2715 | (+) | ||||
| 155864.Z1926 | (+) | ||||
| 155864.Z3375 | (+) | ||||
| 155864.Z0298 | (+) | ||||
| 155864.Z1281 | (+) | ||||
| 155864.Z1205 | (+) | ||||
| 155864.Z2673 | (+) | ||||
| 155864.L7055 | (+) | ||||
| 155864.Z1068 | (+) | ||||
| 155864.Z0972 | (+) | ||||
| 155864.Z5636 | (+) | ||||
| 155864.Z5742 | (+) | ||||
| 155864.Z2367 | (+) | not used | |||
| 155864.Z1213 | (+) | ||||
| 155864.Z4526 | (+) | ||||
| 155864.Z2160 | (+) | ||||
| 155864.Z2161 | (+) | ||||
| 155864.Z3567 | (+) | ||||
| 155864.Z0928 | (+) | ||||
| 155864.Z1523 | (+) | ||||
| 155864.Z3747 | (+) | ||||
| 155864.Z3030 | (+) | ||||
| 155864.Z1454 | (+) | ||||
| 155864.Z1180 | (+) | ||||
| 155864.Z1673 | (+) | ||||
| 155864.Z4220 | (+) | ||||
| 155864.Z1279 | (+) | ||||
| 155864.Z4356 | (+) | ||||
| 155864.Z4731 | (+) | ||||
| 155864.Z5904 | (+) | ||||
| 155864.Z5991 | (+) | ||||
| 155864.Z2513 | (+) | ||||
| 155864.Z2511 | (+) | ||||
| 155864.Z2516 | (+) | ||||
| 155864.Z0541 | (+) | ||||
| 155864.Z3910 | (+) | not used | |||
| 155864.Z5236 | (+) | ||||
| 155864.Z5232 | (+) | ||||
| 155864.Z2241 | (+) | ||||
| 155864.Z3003 | (+) | ||||
| 155864.Z1869 | (+) | ||||
| 155864.Z0116 | (+) | ||||
| 155864.Z1645 | (+) | ||||
| 155864.Z1884 | (+) | not used | |||
| 155864.Z1881 | (+) | ||||
| 155864.Z1086 | (+) | ||||
| 155864.Z4103 | (+) | ||||
| 155864.L7022 | (+) | ||||
| 155864.Z1507 | (+) | ||||
| 155864.Z0056 | (+) | ||||
| 155864.Z0696 | (+) | ||||
| 155864.Z1477 | (+) | ||||
| 155864.Z1471 | (+) | ||||
| 155864.Z4044 | (+) | ||||
| 155864.Z0475 | (+) | ||||
| 155864.Z1873 | (+) | ||||
| 155864.Z1653 | (+) | ||||
| 155864.Z0332 | (+) | ||||
| 155864.Z5365 | (+) | ||||
| 155864.Z1097 | (+) | ||||
| 155864.Z1254 | (+) | ||||
| 155864.Z2686 | (+) | ||||
| 155864.Z5155 | (+) | ||||
| 155864.Z5974 | (+) | ||||
| 155864.Z2752 | (+) | ||||
| 155864.Z3932 | (+) | ||||
| 155864.Z2228 | (+) | ||||
| 155864.Z3483 | (+) | ||||
| 155864.Z3244 | (+) | ||||
| 155864.Z3240 | (+) | ||||
| 155864.Z3241 | (+) | ||||
| 155864.Z0048 | (+) | ||||
| 155864.Z3066 | (+) | not used | |||
| 155864.Z2828 | (+) | not used | |||
| 155864.Z2821 | (+) | ||||
| 155864.Z2031 | (+) | ||||
| 155864.Z2033 | (+) | ||||
| 155864.Z1797 | (+) | ||||
| 155864.Z4168 | (+) | ||||
| 155864.Z1226 | (+) | ||||
| 155864.Z4166 | (+) | ||||
| 155864.Z4306 | (+) | ||||
| 155864.Z4763 | (+) | ||||
| 155864.Z5964 | (+) | ||||
| 155864.Z2780 | (+) | ||||
| 155864.Z1083 | (+) | ||||
| 155864.Z2735 | (+) | ||||
| 155864.Z2325 | (+) | not used | |||
| 155864.Z0829 | (+) | ||||
| 155864.Z5921 | (+) | ||||
| 155864.Z5496 | (+) | ||||
| 155864.Z0783 | (+) | ||||
| 155864.Z0259 | (+) | ||||
| 155864.Z0251 | (+) | ||||
| 155864.Z4578 | (+) | ||||
| 155864.Z5313 | (+) | ||||
| 155864.Z4777 | (+) | ||||
| 155864.Z5957 | (+) | ||||
| 155864.Z6050 | (+) | ||||
| 155864.Z4321 | (+) | ||||
| 155864.Z2242 | (+) | ||||
| 155864.Z2697 | (+) | ||||
| 155864.Z0079 | (+) | ||||
| 155864.Z1938 | (+) | ||||
| 155864.Z0409 | (+) | ||||
| 155864.Z0791 | (+) | ||||
| 155864.Z0883 | (+) | ||||
| 155864.Z1664 | (+) | ||||
| 155864.Z1667 | (+) | ||||
| 155864.Z0336 | (+) | ||||
| 155864.Z0339 | (+) | ||||
| 155864.Z4149 | (+) | ||||
| 155864.Z4011 | (+) | ||||
| 155864.Z2112 | (+) | ||||
| 155864.Z5123 | (+) | ||||
| 155864.Z5946 | (+) | ||||
| 155864.Z4899 | (+) | ||||
| 155864.Z5438 | (+) | ||||
| 155864.Z2301 | (+) | not used | |||
| 155864.Z3054 | (+) | ||||
| 155864.Z0656 | (+) | ||||
| 155864.Z2875 | (+) | ||||
| 155864.Z0432 | (+) | ||||
| 155864.Z0433 | (+) | ||||
| 155864.Z1422 | (+) | ||||
| 155864.Z1322 | (+) | ||||
| 155864.Z0509 | (+) | ||||
| 155864.Z0502 | (+) | ||||
| 155864.Z5833 | (+) | ||||
| 155864.Z0340 | (+) | ||||
| 155864.Z4152 | (+) | ||||
| 155864.Z0347 | (+) | ||||
| 155864.Z0272 | (+) | ||||
| 155864.Z5528 | (+) | ||||
| 155864.Z1107 | (+) | ||||
| 155864.Z5339 | (+) | ||||
| 155864.Z5209 | (+) | ||||
| 155864.Z5068 | (+) | ||||
| 155864.Z2487 | (+) | ||||
| 155864.Z5449 | (+) | ||||
| 155864.Z0258 | (+) | ||||
| 155864.Z2467 | (+) | ||||
| 155864.Z2463 | (+) | ||||
| 155864.Z2009 | (+) | ||||
| 155864.Z3202 | (+) | ||||
| 155864.Z3204 | (+) | ||||
| 155864.Z2366 | (+) | ||||
| 155864.Z1353 | (+) | ||||
| 155864.Z0835 | (+) | ||||
| 155864.Z4632 | (+) | ||||
| 155864.Z5215 | (+) | ||||
| 155864.Z4171 | (+) | ||||
| 155864.Z3980 | (+) | ||||
| 155864.Z3852 | (+) | ||||
| 155864.Z5858 | (+) | not used | |||
| 155864.Z0986 | (+) | ||||
| 155864.Z0636 | (+) | ||||
| 155864.Z3501 | (+) | ||||
| 155864.Z2712 | (+) | ||||
| 155864.Z3183 | (+) | ||||
| 155864.Z0742 | (+) | ||||
| 155864.Z1347 | (+) | ||||
| 155864.Z1345 | (+) | ||||
| 155864.Z3723 | (+) | ||||
| 155864.Z0804 | (+) | ||||
| 155864.Z0162 | (+) | ||||
| 155864.L7008 | (+) | ||||
| 155864.L7002 | (+) | ||||
| 155864.Z1872 | (+) | ||||
| 155864.Z4957 | (+) | ||||
| 155864.Z5865 | (+) | ||||
| 155864.Z4843 | (+) | ||||
| 155864.Z5469 | (+) | ||||
| 155864.Z2444 | (+) | ||||
| 155864.Z5711 | (+) | ||||
| 155864.Z5485 | (+) | ||||
| 155864.Z5616 | (+) | ||||
| 155864.Z3103 | (+) | ||||
| 155864.Z2797 | (+) | ||||
| 155864.Z3503 | (+) | ||||
| 155864.Z2731 | (+) | ||||
| 155864.Z1483 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 2.2 (22/10 KEGG proteins)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.25 (10/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 2.2 (22/10 KEGG proteins)
Estimated copy number = 0.0 (0/10 KEGG proteins)
Estimated copy number = 1.25 (10/8 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
