Effective results for Staphylococcus aureus subsp. aureus Mu50 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 42 proteins (14 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
158878.SAVP008				PF06464	ER
158878.SAV2544				PF05257	ER
158878.SAV1039				(PF05154)	ER
158878.SAV1032				(PF09683)	ER
158878.SAV2373				(PF11070)	ER
158878.SAV0038				(PF08540)	ER
158878.SAV2230				(PF00344)	(mitochondrial)
158878.SAV2653				(PF00344)	(mitochondrial)
158878.SAV2644				PF05257	ER
158878.SAV0755				PF05257	ER
158878.SAV1214				(PF05154)	ER
158878.SAV2601				(PF03306)	ER
158878.SAV0281				PF05257	ER
158878.SAV2566				PF05257	(ER)
158878.SAV2206				(PF03306)	(ER)
158878.SAV2304				PF05257	(mitochondrial)
158878.SAV0665				PF05257	(mitochondrial)
158878.SAV0465				PF05257	(ER)
158878.SAV1945				PF05257	(mitochondrial)
158878.SAVP004				(PF05154)
158878.SAV2546				(PF08540)
158878.SAV0926				(PF01610)
158878.SAV2080				(PF01610)
158878.SAV0493				(PF00398)
158878.SAV2379				(PF01610)
158878.SAV1860				(PF01610)
158878.SAV0737				(PF05495)
158878.SAV0909				PF05257
158878.SAV1720				(PF01610)
158878.SAV0052				(PF00398)
158878.SAV0053				(PF13427)
158878.SAV0913				PF05257
158878.SAV2501				(PF01610)
158878.SAV1247				PF05257
158878.SAV1656				(PF13427)
158878.SAV1655				(PF00398)
158878.SAV0630				(PF01610)
158878.SAV2299				PF05257
158878.SAV1699				(PF01610)
158878.SAV2130				(PF03630)
158878.SAV1162				(PF01610)
158878.SAV0384				(PF01610)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================