Metamenu

Effective results for Xylella fastidiosa 9a5c (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 61
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 16 proteins (1 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
160492.XF1621+ER; (ER)
160492.XF2526(PF08774)(mitochondrial)
160492.XF2292(PF08774)(mitochondrial)
160492.XF1384(PF10142)(mitochondrial)
160492.XF1669(PF00959)mitochondrial
160492.XF2708+ER
160492.XF0638+mitochondrial
160492.XF0996+ER
160492.XF1001(PF04768)(mitochondrial)
160492.XF0889(PF13332)(mitochondrial)
160492.XF2632+(ER); (plastid)
160492.XF1564(PF00959)mitochondrial
160492.XF0565+ER
160492.XF0897(PF13332)mitochondrial
160492.XF0363+ER
160492.XF0513(PF00959)(ER)
160492.XF0682(PF08774)(mitochondrial)
160492.XF0681+(mitochondrial); plastid
160492.XF2237+ER
160492.XF1524+mitochondrial
160492.XF0069+mitochondrial; (mitochondrial)
160492.XF0260+(plastid)
160492.XF1287+(plastid)
160492.XF1269+(plastid)
160492.XF0626+(mitochondrial)
160492.XF2314(PF00959)(ER)
160492.XF0362+(plastid)
160492.XF2775(PF13332)(mitochondrial)
160492.XF2196(PF13332)(mitochondrial)
160492.XF0209+(mitochondrial)
160492.XF1450+
160492.XF0711+
160492.XF0906+
160492.XF1870+
160492.XF1875+
160492.XF2061+
160492.XF0707(PF00959)
160492.XF2724+
160492.XF0818+
160492.XF1493+
160492.XF0629+
160492.XF1800+
160492.XF1485+
160492.XF2025+
160492.XF0749+
160492.XF1828+
160492.XF2036+
160492.XF1697+
160492.XF1031+
160492.XF1211+
160492.XF2004+
160492.XF1752+
160492.XF1591+
160492.XF1761+
160492.XF0382PF17067
160492.XF1888+
160492.XF1158+
160492.XF2765+
160492.XF2340+
160492.XF2500+
160492.XF2504(PF00959)
160492.XF1850+
160492.XF2752+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================