Metamenu

Effective results for Dermacoccus sp. Ellin185 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 19 proteins (3 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
188626.HMPREF0321_0866(PF14342)ER
188626.HMPREF0321_2362(PF01121)(mitochondrial)
188626.HMPREF0321_2516(PF03596)ER
188626.HMPREF0321_1026(PF12821) (PF06738)
188626.HMPREF0321_2361(PF01121)(mitochondrial)
188626.HMPREF0321_1047(PF12821) (PF06738)
188626.HMPREF0321_2050PF08213plastid
188626.HMPREF0321_0621(PF12821) (PF06738)
188626.HMPREF0321_1834(PF12821) (PF06738)
188626.HMPREF0321_0191(PF03596)
188626.HMPREF0321_0207(PF14342)
188626.HMPREF0321_0894(PF05140)
188626.HMPREF0321_0893(PF05140)
188626.HMPREF0321_0169(PF05140)
188626.HMPREF0321_1369(PF09949)
188626.HMPREF0321_0369(PF09949)
188626.HMPREF0321_1191PF00687
188626.HMPREF0321_0002PF00687
188626.HMPREF0321_2468(PF05140)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================