Effective results for Nocardioides sp. JS614 (eggnog40)

Summary

Number of putative secreted proteins: 74
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 74 proteins (3 high, 71 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
196162.Noca_4057				PF13895	ER
196162.Noca_1775				(PF14378)	(ER)
196162.Noca_1167				(PF00941)	mitochondrial; (mitochondrial)
196162.Noca_4273				(PF00941)	(mitochondrial)
196162.Noca_2547				(PF14378)	mitochondrial
196162.Noca_4243				(PF14378)	(ER); ER
196162.Noca_1580				(PF08275)	(mitochondrial)
196162.Noca_0613				(PF06500)	(mitochondrial)
196162.Noca_1817				(PF01186)	ER
196162.Noca_2727				(PF14378)	ER
196162.Noca_1636				(PF00941)	(mitochondrial); plastid
196162.Noca_2425				(PF02729)	(mitochondrial)
196162.Noca_4153				PF13574	ER
196162.Noca_1998				(PF03015)	(ER)
196162.Noca_0594				(PF00941)	(ER)
196162.Noca_1461				(PF06241)	(mitochondrial)
196162.Noca_0436				(PF14378)	(ER)
196162.Noca_1489				(PF00941)	(ER)
196162.Noca_4143				(PF01642) (PF03308)
196162.Noca_2472				(PF02729)
196162.Noca_1561				(PF14378)
196162.Noca_0222				(PF00941)
196162.Noca_0228				(PF00941)
196162.Noca_3806				(PF02732)
196162.Noca_1772				(PF01642)
196162.Noca_1798				(PF03308)
196162.Noca_2064				(PF14378)
196162.Noca_4077				(PF00890)
196162.Noca_4075				(PF00890)
196162.Noca_3818				(PF14378)
196162.Noca_0801				(PF03308)
196162.Noca_4061				(PF00890)
196162.Noca_1947				(PF08275)
196162.Noca_0200				(PF00890)
196162.Noca_0203				(PF00890)
196162.Noca_0798				(PF01642)
196162.Noca_3552				(PF00890)
196162.Noca_4476				(PF06500)
196162.Noca_3314				(PF03437)
196162.Noca_4472				(PF00821)
196162.Noca_3548				(PF00890)
196162.Noca_1140				(PF00890)
196162.Noca_2780				(PF00890)
196162.Noca_3543				(PF03308)
196162.Noca_3545				(PF01642)
196162.Noca_3544				(PF01642)
196162.Noca_1851				(PF00890)
196162.Noca_1850				(PF06249)
196162.Noca_3686				(PF03437)
196162.Noca_3968				(PF00941)
196162.Noca_3693				(PF00890)
196162.Noca_0607				(PF00941)
196162.Noca_0190				(PF00821)
196162.Noca_0198				(PF00890)
196162.Noca_1802				(PF01642)
196162.Noca_0296				(PF00890)
196162.Noca_4168				(PF00821)
196162.Noca_4380				(PF06999)
196162.Noca_2131				(PF01642)
196162.Noca_2130				(PF03308)
196162.Noca_4377				(PF06999)
196162.Noca_1633				(PF00941)
196162.Noca_1632				(PF02729)
196162.Noca_1631				(PF02729)
196162.Noca_0018				(PF00643)
196162.Noca_0462				(PF00890)
196162.Noca_0485				PF08213	not used
196162.Noca_2428				(PF02729)
196162.Noca_1517				(PF02178)
196162.Noca_1033				(PF02729)
196162.Noca_2250				(PF08275)
196162.Noca_3107				(PF04455)
196162.Noca_0032				(PF00890)
196162.Noca_4029				(PF06249)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================