Metamenu

Effective results for Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (eggnog40)

Summary

Number of putative secreted proteins: 17
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 17 proteins (0 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
203120.LEUM_1328(PF03083)ER
203120.LEUM_1313(PF10509)(mitochondrial)
203120.LEUM_1455(PF05014)(mitochondrial)
203120.LEUM_0549(PF03306)
203120.LEUM_0154(PF06026)
203120.LEUM_0444(PF05014)
203120.LEUM_1526(PF09848)
203120.LEUM_1182(PF05014)
203120.LEUM_1069(PF10509)
203120.LEUM_1449(PF03083)
203120.LEUM_0630(PF06026)
203120.LEUM_0517(PF05495)
203120.LEUM_1039(PF09848)
203120.LEUM_1900(PF09848)
203120.LEUM_0883(PF10509)
203120.LEUM_0954(PF03306)
203120.LEUM_0793(PF06026)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================