Metamenu

Effective results for Salmonella bongori NCTC 12419 (eggnog40)

Summary

Number of putative secreted proteins: 539
- Predicted by EffectiveT3: 143 (high confidence), 221 (low confidence)
- Predicted by EffectiveCCBD: 34 within, 21 before, 43 behind expected region 25..70aa
- Predicted by T4SEpre: 86
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 38 proteins (1 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
218493.SBG_1369(>)(PF10142)ER
218493.SBG_2744(<)(ER)
218493.SBG_1697(>)ER
218493.SBG_3702(>)ER
218493.SBG_0126(<)(mitochondrial)
218493.SBG_1864(<)(ER)
218493.SBG_1468(>)ER
218493.SBG_1683(PF03313) (PF03315)(plastid)
218493.SBG_0332(>)ER
218493.SBG_0152+ER
218493.SBG_3218+ER; (ER)
218493.SBG_2763(PF00939)ER
218493.SBG_1529+ER
218493.SBG_1521(>)ER
218493.SBG_3147(>)ER
218493.SBG_3372+(mitochondrial)
218493.SBG_2239+ER
218493.SBG_0311+(mitochondrial); (plastid)
218493.SBG_1676+ER
218493.SBG_2938+ER
218493.SBG_3302+ER
218493.SBG_1304+ER
218493.SBG_1307+ER
218493.SBG_3386(<)ER
218493.SBG_0306+ER
218493.SBG_0782+(<)(PF05935)
218493.SBG_3943+ER
218493.SBG_3948(>)ER
218493.SBG_1821(+)+(PF13475)(plastid)
218493.SBG_1823++
218493.SBG_2921+ER
218493.SBG_1085+ER
218493.SBG_0579+(ER); (plastid)
218493.SBG_0378+(mitochondrial)
218493.SBG_1336+(mitochondrial)
218493.SBG_2053+ER
218493.SBG_3507+ER
218493.SBG_2586(PF03313) (PF03315)(plastid)
218493.SBG_1806+(ER)
218493.SBG_2909(PF03222)ER
218493.SBG_2877(PF03313) (PF03315)(plastid)
218493.SBG_2276+ER
218493.SBG_3578(PF00939)ER
218493.SBG_1772(PF03222)ER
218493.SBG_3577(PF00939)ER
218493.SBG_1378(>)(mitochondrial)
218493.SBG_1512+ER
218493.SBG_0644+ER
218493.SBG_2801(PF00939)ER
218493.SBG_3257+ER
218493.SBG_2630(>)(ER)
218493.SBG_3296+(ER)
218493.SBG_1639+(ER)
218493.SBG_2715+ER
218493.SBG_2713(PF01276) (PF03711)(mitochondrial)
218493.SBG_2627(PF03222)(ER)
218493.SBG_0530(>)mitochondrial
218493.SBG_2629+ER
218493.SBG_0669(PF00939)ER
218493.SBG_0238+mitochondrial; (mitochondrial)
218493.SBG_0596(>)ER
218493.SBG_3068+(mitochondrial); mitochondrial
218493.SBG_0080(<)ER
218493.SBG_3277+(ER)
218493.SBG_3384+ER; mitochondrial
218493.SBG_1380(PF06884)ER
218493.SBG_0216(>)ER
218493.SBG_0526(PF00939)ER
218493.SBG_2520+ER
218493.SBG_2029+ER
218493.SBG_3487(>)ER
218493.SBG_2834+ER
218493.SBG_0411(>)ER
218493.SBG_0288+ER
218493.SBG_2287+ER
218493.SBG_3138+mitochondrial; (mitochondrial)
218493.SBG_1411+(mitochondrial)
218493.SBG_2611(<)(ER)
218493.SBG_3747(>)ER
218493.SBG_0765+(mitochondrial); (plastid)
218493.SBG_1321(>)ER
218493.SBG_2293+ER
218493.SBG_3104(>)(ER)
218493.SBG_0825+(ER)
218493.SBG_3808+ER
218493.SBG_2977(>)ER
218493.SBG_1988(>)(mitochondrial)
218493.SBG_2363(+)ER
218493.SBG_0331(+)(ER)
218493.SBG_3825++
218493.SBG_1506+(>)
218493.SBG_2880+(PF03222)
218493.SBG_0925(+)+(mitochondrial)
218493.SBG_2761+(mitochondrial)
218493.SBG_0032+(PF05935)
218493.SBG_2780(+)mitochondrial; (mitochondrial)
218493.SBG_2435+(>)
218493.SBG_3533(+)ER; (ER)
218493.SBG_1008(>)(mitochondrial)
218493.SBG_3373+(plastid)
218493.SBG_2517+(plastid)
218493.SBG_3790+(mitochondrial)
218493.SBG_1532+(plastid)
218493.SBG_3620(+)ER; (ER)
218493.SBG_2334(PF01276) (PF03711)
218493.SBG_2148+(mitochondrial)
218493.SBG_1788+plastid
218493.SBG_0789+(PF13475)
218493.SBG_3893(+)(mitochondrial)
218493.SBG_3668A(+)ER
218493.SBG_0934+PF09612
218493.SBG_1798+(plastid)
218493.SBG_1790++
218493.SBG_1312(+)(ER)
218493.SBG_1253+(mitochondrial)
218493.SBG_0983(+)ER; (ER)
218493.SBG_2057++
218493.SBG_3988(>)(mitochondrial)
218493.SBG_2572(+)(mitochondrial)
218493.SBG_2060+(plastid)
218493.SBG_2488+(<)
218493.SBG_0225(PF01276) (PF03711)
218493.SBG_1511(+)+(mitochondrial)
218493.SBG_2193(+)(mitochondrial)
218493.SBG_3072+(>)
218493.SBG_3448++
218493.SBG_2009(PF03313) (PF03315)
218493.SBG_1754+plastid
218493.SBG_1355(+)ER
218493.SBG_3807++
218493.SBG_3526(+)(mitochondrial)
218493.SBG_3982+(mitochondrial)
218493.SBG_3737(PF01276) (PF03711)
218493.SBG_0602(>)(mitochondrial)
218493.SBG_0285(+)ER
218493.SBG_1978(+)ER
218493.SBG_1891++
218493.SBG_1560++
218493.SBG_3252(<)
218493.SBG_2042(+)(ER)
218493.SBG_2504++
218493.SBG_2290+(mitochondrial)
218493.SBG_1350+(plastid)
218493.SBG_1717+(plastid)
218493.SBG_1405(+)(ER)
218493.SBG_3755++
218493.SBG_0591(PF01276) (PF03711)
218493.SBG_3027+(mitochondrial)
218493.SBG_2181+
218493.SBG_1389+
218493.SBG_3763(>)
218493.SBG_0056+
218493.SBG_0053+
218493.SBG_1182(+)(ER)
218493.SBG_3900+
218493.SBG_0630+
218493.SBG_1869(PF00834)
218493.SBG_2988+
218493.SBG_2967+
218493.SBG_1990+
218493.SBG_3222+
218493.SBG_0801+
218493.SBG_2772(+)(mitochondrial)
218493.SBG_2177+
218493.SBG_0020+
218493.SBG_1047+
218493.SBG_2554+
218493.SBG_1193+
218493.SBG_0483+
218493.SBG_3820+
218493.SBG_2424+
218493.SBG_1504+
218493.SBG_3912+
218493.SBG_2318(>)
218493.SBG_2391+
218493.SBG_3365+
218493.SBG_2227+
218493.SBG_2949+
218493.SBG_0038(+)(PF05935)
218493.SBG_2781(PF03738)
218493.SBG_0497+
218493.SBG_0328+
218493.SBG_0143+
218493.SBG_3872+
218493.SBG_1848(<)
218493.SBG_1841+
218493.SBG_3142(>)
218493.SBG_3204+
218493.SBG_2153+
218493.SBG_3557(<)
218493.SBG_3558+
218493.SBG_1021+
218493.SBG_1022+
218493.SBG_1028+
218493.SBG_0319+
218493.SBG_0172+
218493.SBG_3977+
218493.SBG_3158(+)(PF03222)
218493.SBG_0948+
218493.SBG_2332+
218493.SBG_2147+
218493.SBG_2506(PF07720)
218493.SBG_3418(<)
218493.SBG_3525+
218493.SBG_0018+
218493.SBG_1789(+)(plastid)
218493.SBG_0205+
218493.SBG_1446+
218493.SBG_1444(PF00834)
218493.SBG_3091+
218493.SBG_3090(PF00834)
218493.SBG_1828+
218493.SBG_2920(>)
218493.SBG_2925+
218493.SBG_0688+
218493.SBG_0974(+)+
218493.SBG_2852+
218493.SBG_3400+
218493.SBG_0991+
218493.SBG_1225+
218493.SBG_1313+
218493.SBG_0193+
218493.SBG_0752+
218493.SBG_0680+
218493.SBG_2635+
218493.SBG_2917(<)
218493.SBG_3327+
218493.SBG_0980(+)(ER)
218493.SBG_2698+
218493.SBG_1563+
218493.SBG_2585+
218493.SBG_0797+
218493.SBG_0203(+)(mitochondrial)
218493.SBG_0364(>)
218493.SBG_1109+
218493.SBG_0962(<)
218493.SBG_0187+
218493.SBG_0690(<)
218493.SBG_3981+
218493.SBG_2875(PF03313)
218493.SBG_2067+
218493.SBG_2066(+)(ER)
218493.SBG_1570+
218493.SBG_3605+
218493.SBG_3602(+)(mitochondrial)
218493.SBG_0429+
218493.SBG_1112+
218493.SBG_0437+
218493.SBG_2483+
218493.SBG_2489+
218493.SBG_0511+
218493.SBG_0226(>)
218493.SBG_3199+
218493.SBG_1901+
218493.SBG_2831+
218493.SBG_2837+
218493.SBG_2241(>)
218493.SBG_0905(+)(mitochondrial)
218493.SBG_2794+
218493.SBG_3456(>)
218493.SBG_3298(PF06176)
218493.SBG_1244+
218493.SBG_1294(+)(<)
218493.SBG_1243(>)
218493.SBG_2494+
218493.SBG_0505+
218493.SBG_3500+
218493.SBG_1910(>)
218493.SBG_2812+
218493.SBG_1014+
218493.SBG_1017+
218493.SBG_2008+
218493.SBG_1758+
218493.SBG_3666+
218493.SBG_1359+
218493.SBG_2623+
218493.SBG_3712+
218493.SBG_0242+
218493.SBG_0247+
218493.SBG_3256+
218493.SBG_2532+
218493.SBG_0660+
218493.SBG_0666+
218493.SBG_1663+
218493.SBG_0813+
218493.SBG_3385(>)
218493.SBG_0872+
218493.SBG_1729(+)(plastid)
218493.SBG_0524+
218493.SBG_0743+
218493.SBG_3876+
218493.SBG_0674+
218493.SBG_0675+
218493.SBG_0386+
218493.SBG_2389(+)+
218493.SBG_2380(+)+
218493.SBG_3527+
218493.SBG_1233+
218493.SBG_3468+
218493.SBG_0458+
218493.SBG_1016+
218493.SBG_1010+
218493.SBG_2731+
218493.SBG_2738(PF03738)
218493.SBG_3484+
218493.SBG_1399(<)
218493.SBG_0267(<)
218493.SBG_0261(>)
218493.SBG_2512+
218493.SBG_0609+
218493.SBG_0280+
218493.SBG_0814(+)(mitochondrial)
218493.SBG_3003+
218493.SBG_1895+
218493.SBG_1621(<)
218493.SBG_1647+
218493.SBG_2354(>)
218493.SBG_2035(+)(mitochondrial)
218493.SBG_1707+
218493.SBG_1709+
218493.SBG_1708+
218493.SBG_2723(+)(plastid)
218493.SBG_1413+
218493.SBG_1419+
218493.SBG_2614(+)(ER)
218493.SBG_0077+
218493.SBG_0070+
218493.SBG_1076+
218493.SBG_2503+
218493.SBG_0477+
218493.SBG_3922+
218493.SBG_0616(>)
218493.SBG_0617+
218493.SBG_0864+
218493.SBG_3819(PF03738)
218493.SBG_0109+
218493.SBG_2297+
218493.SBG_2344(<)
218493.SBG_2098+
218493.SBG_2757(>)
218493.SBG_2755+
218493.SBG_0403+
218493.SBG_1665(<)
218493.SBG_0046+
218493.SBG_0599+
218493.SBG_2578+
218493.SBG_0448+
218493.SBG_3938+
218493.SBG_0001A+not used
218493.SBG_1872+
218493.SBG_3718+
218493.SBG_1086+
218493.SBG_2974+
218493.SBG_1980+
218493.SBG_0907+
218493.SBG_2373(PF14328)
218493.SBG_0715(+)(mitochondrial)
218493.SBG_3344+
218493.SBG_0838(+)+
218493.SBG_1276(+)
218493.SBG_1470(+)
218493.SBG_1691(+)
218493.SBG_0588(+)
218493.SBG_0455(+)
218493.SBG_1180(+)
218493.SBG_0633(+)
218493.SBG_0120(+)
218493.SBG_3169(+)
218493.SBG_0936(+)
218493.SBG_3687(+)
218493.SBG_2173(+)
218493.SBG_2080(+)
218493.SBG_1681(+)
218493.SBG_2799(+)
218493.SBG_2791(+)
218493.SBG_0334(+)
218493.SBG_1851(+)
218493.SBG_2955(+)
218493.SBG_3179(+)
218493.SBG_0924(+)
218493.SBG_0922(+)
218493.SBG_0921(+)
218493.SBG_2560(+)
218493.SBG_2311(+)
218493.SBG_3361(+)
218493.SBG_3360(+)
218493.SBG_2646(+)
218493.SBG_1459(+)
218493.SBG_3549(+)
218493.SBG_3546(+)
218493.SBG_0031(+)
218493.SBG_2548(+)
218493.SBG_2547(+)
218493.SBG_2789(+)
218493.SBG_2433(+)
218493.SBG_2430(+)
218493.SBG_3140(+)
218493.SBG_3143(+)
218493.SBG_2899(+)
218493.SBG_3582(+)
218493.SBG_2894(+)
218493.SBG_2896(+)
218493.SBG_0953(+)
218493.SBG_2300(+)
218493.SBG_2301(+)
218493.SBG_1337(+)
218493.SBG_1333(+)
218493.SBG_3799(+)
218493.SBG_1201(+)
218493.SBG_1205(+)
218493.SBG_0007(+)
218493.SBG_1158(+)
218493.SBG_0798(+)
218493.SBG_0777(+)
218493.SBG_1072(+)
218493.SBG_3419(+)
218493.SBG_0955A(+)
218493.SBG_1169(+)
218493.SBG_1491(+)
218493.SBG_2454(+)
218493.SBG_3891(+)
218493.SBG_1445(+)
218493.SBG_3949(+)
218493.SBG_3219(+)
218493.SBG_3311(+)
218493.SBG_3315(+)
218493.SBG_2219(+)
218493.SBG_0932(+)
218493.SBG_3405(+)
218493.SBG_0998(+)
218493.SBG_2593(+)
218493.SBG_0376(+)
218493.SBG_1172+
218493.SBG_0682(+)
218493.SBG_1814(+)
218493.SBG_1818(+)
218493.SBG_1967(+)
218493.SBG_0259(+)
218493.SBG_0257(+)
218493.SBG_2266(+)
218493.SBG_1650(+)
218493.SBG_2699(+)
218493.SBG_0691(+)
218493.SBG_3985(+)
218493.SBG_2902(+)
218493.SBG_2876(+)
218493.SBG_2874(+)
218493.SBG_2112(+)
218493.SBG_3423(+)
218493.SBG_3512(+)
218493.SBG_3604(+)
218493.SBG_1372(+)
218493.SBG_1373(+)
218493.SBG_1110(+)
218493.SBG_1116(+)
218493.SBG_0347(+)
218493.SBG_2486(+)
218493.SBG_2480(+)
218493.SBG_3990(+)
218493.SBG_3191(+)
218493.SBG_3043(+)
218493.SBG_1250(+)
218493.SBG_2242(+)
218493.SBG_0506(+)
218493.SBG_1246(+)
218493.SBG_1291(+)
218493.SBG_0345(+)
218493.SBG_2495(+)
218493.SBG_2493(+)
218493.SBG_2652(+)
218493.SBG_3705(+)
218493.SBG_3855(+)
218493.SBG_0723(+)
218493.SBG_0725(+)
218493.SBG_0658(+)
218493.SBG_2817(+)
218493.SBG_2818(+)
218493.SBG_2258(+)
218493.SBG_0883(+)
218493.SBG_2253(+)
218493.SBG_2718(+)
218493.SBG_1363(+)
218493.SBG_1629(+)
218493.SBG_0392(+)
218493.SBG_2827(+)
218493.SBG_0891(+)
218493.SBG_0507(+)
218493.SBG_2709(+)
218493.SBG_3653(+)
218493.SBG_3495(+)
218493.SBG_0527(+)
218493.SBG_0529(+)
218493.SBG_0709(+)
218493.SBG_0704(+)
218493.SBG_0095(+)
218493.SBG_0385(+)
218493.SBG_2732(+)
218493.SBG_2021(+)
218493.SBG_2023(+)
218493.SBG_0542(+)
218493.SBG_1212(+)
218493.SBG_1736(+)
218493.SBG_3738(+)
218493.SBG_0269(+)
218493.SBG_0604(+)
218493.SBG_1894(+)
218493.SBG_1035(+)
218493.SBG_3135(+)
218493.SBG_0061(+)
218493.SBG_2355(+)
218493.SBG_0855(+)
218493.SBG_1703(+)
218493.SBG_1702(+)
218493.SBG_2726(+)
218493.SBG_2725(+)
218493.SBG_2613(+)
218493.SBG_0274(+)
218493.SBG_0278(+)
218493.SBG_1671(+)
218493.SBG_2505(+)
218493.SBG_2502(+)
218493.SBG_3240(+)
218493.SBG_0826(+)
218493.SBG_1714(+)
218493.SBG_2753(+)
218493.SBG_2199(+)
218493.SBG_1409(+)
218493.SBG_0737(+)
218493.SBG_0040(+)
218493.SBG_2576(+)
218493.SBG_3935(+)
218493.SBG_0133(+)
218493.SBG_0134(+)
218493.SBG_3850(+)
218493.SBG_3025(+)
218493.SBG_2378(+)
218493.SBG_0900(+)
218493.SBG_1605(+)
218493.SBG_0321(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.0 (10/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================