Metamenu

Effective results for Streptococcus uberis 0140J (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 83
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 33 proteins (1 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
218495.SUB0375+ER
218495.SUB0012+ER
218495.SUB1231+ER
218495.SUB0905(PF00232)ER; (ER)
218495.SUB0002+mitochondrial; (mitochondrial)
218495.SUB1403+(ER)
218495.SUB1407+(ER); (mitochondrial)
218495.SUB1643+ER
218495.SUB1097+ER
218495.SUB1385+mitochondrial
218495.SUB1477+ER
218495.SUB0668+(ER)
218495.SUB1007+ER
218495.SUB1154(PF06280)(mitochondrial); (ER)
218495.SUB0823+ER
218495.SUB0784+ER
218495.SUB0366+ER
218495.SUB1785+ER
218495.SUB1784+ER
218495.SUB1212+(ER)
218495.SUB0239+(mitochondrial)
218495.SUB0751+(mitochondrial)
218495.SUB0384+(mitochondrial)
218495.SUB1556+(mitochondrial)
218495.SUB1859+(ER)
218495.SUB0859+(PF08282)
218495.SUB0580+(mitochondrial)
218495.SUB0826(PF06280)(mitochondrial)
218495.SUB0966+
218495.SUB1490+
218495.SUB0796+
218495.SUB0484+
218495.SUB0373+
218495.SUB1354(PF08282)
218495.SUB0800(PF00232)
218495.SUB1764+
218495.SUB1781+
218495.SUB1755+
218495.SUB1539(PF00232)
218495.SUB1531(PF08282)
218495.SUB1408+
218495.SUB0914+
218495.SUB0109+
218495.SUB0720+
218495.SUB1251(PF08282)
218495.SUB0734+
218495.SUB0608(PF08282)
218495.SUB1063(PF08282)
218495.SUB0382+
218495.SUB1720+
218495.SUB0709+
218495.SUB1381(PF08282)
218495.SUB1710(PF05495)
218495.SUB1043PF02916
218495.SUB1448(PF00232)
218495.SUB1447(PF08282)
218495.SUB0654+
218495.SUB0093+
218495.SUB0278+
218495.SUB0276+
218495.SUB1057(PF08282)
218495.SUB1290+
218495.SUB1292+
218495.SUB0269+
218495.SUB0513+
218495.SUB0441+
218495.SUB0864(PF00232)
218495.SUB0180(PF08282)
218495.SUB1582+
218495.SUB0523+
218495.SUB0452+
218495.SUB0981+
218495.SUB0198(PF00232)
218495.SUB0069+
218495.SUB0200(PF00232)
218495.SUB0538+
218495.SUB1481(PF08282)
218495.SUB1315+
218495.SUB1008+
218495.SUB0841(PF00232)
218495.SUB1639+
218495.SUB1865+
218495.SUB0309(PF00232)
218495.SUB0836(PF08282)
218495.SUB0837(PF00232)
218495.SUB0834(PF00232)
218495.SUB0716(PF01487)
218495.SUB0714+
218495.SUB0557(PF08282)
218495.SUB0558(PF08282)
218495.SUB0315(PF08282)
218495.SUB1579(PF00232)
218495.SUB1574+
218495.SUB0959+
218495.SUB0038+
218495.SUB1361(PF01487)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================