Effective results for Salmonella enterica subsp. enterica serovar Typhi str. CT18 (eggnog40)
Summary
Number of putative secreted proteins: 721
- Predicted by EffectiveT3: 199 (high confidence), 276 (low confidence)
- Predicted by EffectiveCCBD: 31 within, 26 before, 46 behind expected region 25..70aa
- Predicted by T4SEpre: 125
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 68 proteins (14 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 220341.HCM1.15c.1N | + | ER | |||
| 220341.HCM1.70 | (>) | (mitochondrial) | |||
| 220341.STY4858 | + | (mitochondrial) | |||
| 220341.STY4104 | + | (ER) | |||
| 220341.STY0248 | (>) | ER | |||
| 220341.STY0794 | + | ER | |||
| 220341.STY2406 | (>) | (mitochondrial) | |||
| 220341.STY3317 | (<) | (ER) | |||
| 220341.STY3313 | (>) | ER | |||
| 220341.STY0383 | + | ER | |||
| 220341.STY4824 | + | (mitochondrial) | |||
| 220341.STY4135 | + | ER | |||
| 220341.STY4480 | (PF03918) | (mitochondrial) | |||
| 220341.STY0671 | (>) | mitochondrial; (mitochondrial) | |||
| 220341.STY3178 | + | ER | |||
| 220341.STY2301 | (>) | (mitochondrial) | |||
| 220341.STY3529 | (>) | ER | |||
| 220341.STY3967 | + | (mitochondrial) | |||
| 220341.STY1334 | (<) | ER; (ER) | |||
| 220341.HCM2.0070c | + | (mitochondrial); plastid | |||
| 220341.STY4837 | (PF00345) | ER | |||
| 220341.STY1800 | + | ER; (ER) | |||
| 220341.STY4943 | (PF00345) | ER | |||
| 220341.STY0335 | (PF00345) | ER | |||
| 220341.STY2680 | + | ER | |||
| 220341.STY3087 | (PF00345) | ER | |||
| 220341.STY1479 | + | (mitochondrial) | |||
| 220341.STY0274 | + | mitochondrial | |||
| 220341.STY2430 | (>) | (PF03313) (PF03315) | |||
| 220341.STY1905 | + | (ER) | |||
| 220341.STY3919 | (PF00345) | ER | |||
| 220341.STY2748 | + | ER | |||
| 220341.STY2450 | + | (ER); ER | |||
| 220341.STY4582 | + | ER | |||
| 220341.STY0206 | (PF00345) | ER | |||
| 220341.STY4563 | + | (ER) | |||
| 220341.HCM1.75 | (<) | ER | |||
| 220341.STY3422 | (PF03313) (PF03315) | (plastid) | |||
| 220341.STY2353 | + | ER | |||
| 220341.STY1882 | + | ER; (ER) | |||
| 220341.STY0464 | + | (mitochondrial) | |||
| 220341.STY1587 | + | ER | |||
| 220341.STY4176 | + | ER; (ER) | |||
| 220341.STY0509 | (>) | ER | |||
| 220341.STY0180 | + | ER | |||
| 220341.STY0303 | + | ER | |||
| 220341.STY1590 | + | ER | |||
| 220341.STY4234 | + | ER | |||
| 220341.STY3579 | PF05935 | ER | |||
| 220341.STY0408 | (>) | ER | |||
| 220341.STY2482 | + | (ER) | |||
| 220341.STY3175 | (PF00345) | ER | |||
| 220341.STY1437 | (>) | ER | |||
| 220341.STY3966 | (PF03918) | ER | |||
| 220341.STY3964 | (PF16327) | ER | |||
| 220341.STY1949 | + | ER | |||
| 220341.STY4539 | + | ER | |||
| 220341.STY2705 | (PF10662) | (mitochondrial) | |||
| 220341.STY1975 | (>) | ER | |||
| 220341.STY2380 | (PF00345) | ER | |||
| 220341.STY4029 | + | ER | |||
| 220341.HCM1.176 | + | (ER) | |||
| 220341.STY1043 | + | ER | |||
| 220341.STY1047 | + | (mitochondrial); plastid | |||
| 220341.HCM1.165c | (PF00186) | mitochondrial | |||
| 220341.STY1552 | + | (mitochondrial) | |||
| 220341.STY1956 | (PF03313) (PF03315) | (plastid) | |||
| 220341.STY4256 | (>) | ER | |||
| 220341.STY2040 | + | (mitochondrial); plastid | |||
| 220341.STY3149 | (<) | (ER) | |||
| 220341.STY1384 | + | ER | |||
| 220341.STY0380 | + | ER | |||
| 220341.STY0387 | + | (mitochondrial); (plastid) | |||
| 220341.STY3703 | + | (mitochondrial); (plastid) | |||
| 220341.STY4469 | (>) | mitochondrial | |||
| 220341.STY4081 | + | (ER) | |||
| 220341.STY2295 | + | (mitochondrial) | |||
| 220341.STY4414 | (>) | (mitochondrial) | |||
| 220341.STY1719 | + | ER | |||
| 220341.STY1570 | (>) | ER | |||
| 220341.STY0372 | (PF00345) | ER | |||
| 220341.STY0378 | + | ER | |||
| 220341.STY4721 | + | ER | |||
| 220341.STY4479 | (PF16327) | ER | |||
| 220341.STY3952 | (<) | ER | |||
| 220341.STY3007 | + | + | (plastid) | ||
| 220341.STY0025 | (PF00345) | ER | |||
| 220341.STY0592 | (PF00345) | ER | |||
| 220341.STY2261 | (PF10662) | mitochondrial | |||
| 220341.STY4577 | + | ER | |||
| 220341.STY1502 | (PF06884) | ER | |||
| 220341.STY4066 | + | (mitochondrial) | |||
| 220341.STY1508 | + | ER | |||
| 220341.STY1168 | + | ER | |||
| 220341.STY0369 | (PF00345) | ER | |||
| 220341.STY3585 | + | ER | |||
| 220341.STY0747 | (>) | ER | |||
| 220341.STY0032 | (PF00345) | ER | |||
| 220341.STY3471 | + | ER | |||
| 220341.STY4609 | + | (mitochondrial) | |||
| 220341.STY1504 | (>) | (mitochondrial) | |||
| 220341.STY1518 | (PF10142) | ER | |||
| 220341.STY4453 | (>) | ER | |||
| 220341.STY3110 | (PF03313) (PF03315) | (plastid) | |||
| 220341.STY2881 | + | (mitochondrial); (plastid) | |||
| 220341.STY0201 | + | ER | |||
| 220341.STY2086 | + | + | (plastid) | ||
| 220341.STY3878 | + | (mitochondrial) | |||
| 220341.STY0345 | (PF00345) | ER | |||
| 220341.STY4297 | (>) | ER | |||
| 220341.STY0107 | (<) | ER | |||
| 220341.STY2475 | (PF16327) | ER | |||
| 220341.STY2473 | (PF03918) | ER | |||
| 220341.STY4339 | + | (mitochondrial); mitochondrial | |||
| 220341.STY4853 | + | (PF13391) | |||
| 220341.STY4850 | + | (plastid) | |||
| 220341.STY1536 | + | plastid | |||
| 220341.STY4100 | (+) | (>) | (plastid) | ||
| 220341.STY4922 | + | (mitochondrial) | |||
| 220341.STY4928 | (>) | (mitochondrial) | |||
| 220341.HCM2.0046c | (>) | (mitochondrial) | |||
| 220341.STY3860 | (+) | (ER) | |||
| 220341.HCM1.270 | + | + | |||
| 220341.STY1783 | (+) | ER; (ER) | |||
| 220341.STY4827 | (+) | mitochondrial | |||
| 220341.STY4557 | + | + | |||
| 220341.STY2127 | + | plastid | |||
| 220341.STY2936 | + | (>) | |||
| 220341.STY0046 | + | PF05935 | |||
| 220341.STY4266 | + | mitochondrial | |||
| 220341.STY4809 | + | (ER) | |||
| 220341.STY4579 | (+) | ER | |||
| 220341.STY2753 | + | (mitochondrial) | |||
| 220341.STY4039 | (<) | + | |||
| 220341.STY2597 | + | (mitochondrial) | |||
| 220341.STY2177 | + | (plastid) | |||
| 220341.STY4701 | + | (mitochondrial) | |||
| 220341.STY4515 | + | (>) | |||
| 220341.STY3365 | (+) | mitochondrial; (mitochondrial) | |||
| 220341.STY2167 | + | plastid | |||
| 220341.STY2169 | + | + | |||
| 220341.STY1715 | + | (>) | |||
| 220341.STY4198 | (+) | (mitochondrial) | |||
| 220341.STY2487 | (+) | (mitochondrial) | |||
| 220341.STY1722 | + | + | |||
| 220341.HCM1.96 | PF08536 | (plastid) | |||
| 220341.STY2838 | (+) | ER | |||
| 220341.STY3152 | (+) | (ER) | |||
| 220341.STY4381 | + | (mitochondrial) | |||
| 220341.STY0811 | + | + | |||
| 220341.STY0579 | (+) | (mitochondrial) | |||
| 220341.STY0395 | + | (plastid) | |||
| 220341.STY4738 | + | + | |||
| 220341.STY1964 | + | (plastid) | |||
| 220341.STY3016 | + | (mitochondrial) | |||
| 220341.STY1115 | (+) | (mitochondrial) | |||
| 220341.STY2486 | + | + | |||
| 220341.STY1401 | + | (ER) | |||
| 220341.STY4720 | + | + | |||
| 220341.STY3001 | (+) | (PF00102) | (mitochondrial) | ||
| 220341.HCM1.58c | + | + | |||
| 220341.STY4439 | (+) | (ER) | |||
| 220341.STY3858 | + | (mitochondrial) | |||
| 220341.STY0749 | (>) | (mitochondrial) | |||
| 220341.STY0039 | + | PF05935 | |||
| 220341.HCM1.136 | + | (plastid) | |||
| 220341.STY4333 | + | (>) | |||
| 220341.STY1209 | (>) | (mitochondrial) | |||
| 220341.STY2466 | (+) | (ER) | |||
| 220341.STY2860 | + | + | |||
| 220341.STY1182 | (+) | ER; (ER) | |||
| 220341.STY1692 | + | (mitochondrial) | |||
| 220341.STY2988 | + | (<) | |||
| 220341.STY4711 | (+) | mitochondrial; (mitochondrial) | |||
| 220341.STY4112 | + | (mitochondrial) | |||
| 220341.STY1792 | (+) | mitochondrial; (mitochondrial) | |||
| 220341.STY2256 | + | ||||
| 220341.STY2255 | + | ||||
| 220341.STY3306 | + | ||||
| 220341.STY2258 | (>) | ||||
| 220341.STY3879 | + | ||||
| 220341.HCM1.114 | + | ||||
| 220341.HCM1.178ac | + | ||||
| 220341.STY3859 | + | ||||
| 220341.HCM1.109 | + | ||||
| 220341.STY0932 | (+) | (plastid) | |||
| 220341.STY1351 | + | ||||
| 220341.HCM1.238c | PF03400 | ||||
| 220341.STY1223 | + | ||||
| 220341.STY1222 | + | ||||
| 220341.STY1229 | + | ||||
| 220341.STY3912 | (<) | ||||
| 220341.STY3685 | (<) | ||||
| 220341.STY4921 | + | ||||
| 220341.STY2408 | + | ||||
| 220341.STY4327 | + | ||||
| 220341.STY3468 | (<) | ||||
| 220341.STY0467 | (+) | (mitochondrial) | |||
| 220341.STY0462 | + | ||||
| 220341.STY0947 | + | ||||
| 220341.STY2222 | (>) | ||||
| 220341.STY3310 | (PF03738) | ||||
| 220341.STY2456 | (+) | (mitochondrial) | |||
| 220341.STY3100 | + | ||||
| 220341.HCM1.273 | + | ||||
| 220341.STY1344 | + | ||||
| 220341.STY1036 | + | ||||
| 220341.STY1323 | (PF10685) | ||||
| 220341.STY0324 | + | ||||
| 220341.STY4828 | + | ||||
| 220341.STY0818 | + | ||||
| 220341.STY4825 | + | ||||
| 220341.STY4136 | + | ||||
| 220341.HCM1.136a | PF03400 | ||||
| 220341.STY4626 | (PF05929) | ||||
| 220341.STY4623 | + | ||||
| 220341.STY4628 | + | ||||
| 220341.HCM1.239c | + | ||||
| 220341.STY0782 | + | ||||
| 220341.STY4551 | + | not used | |||
| 220341.STY3673 | + | ||||
| 220341.STY0078 | + | ||||
| 220341.STY3679 | (+) | + | |||
| 220341.STY2419 | PF03400 | ||||
| 220341.STY4313 | (PF00834) | ||||
| 220341.STY3780 | + | ||||
| 220341.STY3069 | + | ||||
| 220341.STY3097 | (PF02595) | ||||
| 220341.STY2789 | (>) | ||||
| 220341.STY1226a | + | ||||
| 220341.STY2541 | + | ||||
| 220341.STY3006 | + | ||||
| 220341.HCM1.31c | + | ||||
| 220341.HCM1.262 | + | ||||
| 220341.STY1793 | + | ||||
| 220341.STY1249 | + | ||||
| 220341.STY0319 | + | ||||
| 220341.HCM1.102 | + | ||||
| 220341.STY0260 | (>) | ||||
| 220341.STY4637 | + | ||||
| 220341.STY4125 | PF03400 | ||||
| 220341.STY4124 | + | ||||
| 220341.STY2420 | + | ||||
| 220341.STY2429 | + | ||||
| 220341.STY3796 | + | ||||
| 220341.STY0446 | (>) | ||||
| 220341.STY2682 | (>) | ||||
| 220341.STY2756 | + | ||||
| 220341.STY3332 | (>) | ||||
| 220341.STY4013 | + | ||||
| 220341.STY2689 | (+) | + | |||
| 220341.STY0808 | + | ||||
| 220341.STY1019 | (+) | (mitochondrial) | |||
| 220341.STY0480 | + | ||||
| 220341.STY1655 | (+) | (<) | |||
| 220341.HCM1.32c | (>) | ||||
| 220341.STY1477 | + | ||||
| 220341.STY1470 | + | ||||
| 220341.STY0870 | (+) | (mitochondrial) | |||
| 220341.STY0617 | + | ||||
| 220341.HCM1.04c | PF03400 | ||||
| 220341.STY0050 | + | ||||
| 220341.STY0057 | + | ||||
| 220341.STY3653 | + | ||||
| 220341.STY3432 | + | ||||
| 220341.STY3501 | + | ||||
| 220341.STY2693 | (>) | ||||
| 220341.STY0400 | + | ||||
| 220341.STY4662 | (<) | ||||
| 220341.STY2100 | (+) | (plastid) | |||
| 220341.HCM1.87 | + | ||||
| 220341.STY1487 | (<) | ||||
| 220341.STY1648 | + | ||||
| 220341.STY2912 | + | ||||
| 220341.STY1215 | + | ||||
| 220341.STY4812 | + | ||||
| 220341.STY4819 | + | ||||
| 220341.STY3642 | (>) | ||||
| 220341.HCM1.77 | + | ||||
| 220341.HCM1.74 | + | ||||
| 220341.STY3429 | (PF02595) | ||||
| 220341.STY0668 | + | ||||
| 220341.HCM1.205c | + | ||||
| 220341.STY2352 | + | ||||
| 220341.STY3251 | + | ||||
| 220341.STY0664 | + | ||||
| 220341.STY3514 | + | ||||
| 220341.STY4219 | + | ||||
| 220341.STY2596 | + | ||||
| 220341.STY2179 | + | ||||
| 220341.HCM2.0106c | + | ||||
| 220341.HCM2.0126c | + | ||||
| 220341.STY0098 | + | ||||
| 220341.HCM1.183 | + | ||||
| 220341.STY0985 | (+) | + | |||
| 220341.STY0215 | + | ||||
| 220341.STY4861 | + | ||||
| 220341.HCM1.204c | PF03400 | ||||
| 220341.STY4518 | (<) | ||||
| 220341.STY1854 | + | ||||
| 220341.STY1855 | (+) | plastid | |||
| 220341.STY1850 | + | ||||
| 220341.STY4170 | + | ||||
| 220341.STY4173 | + | ||||
| 220341.STY0501 | + | ||||
| 220341.STY4194 | + | ||||
| 220341.STY2345 | + | ||||
| 220341.STY2131 | + | ||||
| 220341.HCM1.64 | + | ||||
| 220341.STY2766 | + | ||||
| 220341.STY3366 | (PF03738) | ||||
| 220341.STY3163 | + | ||||
| 220341.HCM1.192 | + | ||||
| 220341.STY1447 | (PF00834) | ||||
| 220341.STY4199 | + | ||||
| 220341.STY1062 | + | ||||
| 220341.STY1289 | (<) | ||||
| 220341.STY0081 | + | ||||
| 220341.STY1849 | + | ||||
| 220341.HCM1.52 | + | ||||
| 220341.HCM2.0051c | + | ||||
| 220341.HCM2.0059c | + | ||||
| 220341.STY3197 | + | ||||
| 220341.STY0402 | (<) | ||||
| 220341.STY1935 | (<) | ||||
| 220341.STY1933 | + | ||||
| 220341.STY2804 | + | ||||
| 220341.STY3370 | PF05935 | ||||
| 220341.STY3565 | + | ||||
| 220341.HCM2.0068c | + | ||||
| 220341.STY4793 | + | ||||
| 220341.STY3592 | + | ||||
| 220341.STY1720 | + | ||||
| 220341.STY0237 | + | ||||
| 220341.STY1548 | (PF10685) | ||||
| 220341.HCM1.284c | + | ||||
| 220341.STY1360 | + | ||||
| 220341.STY0527 | + | ||||
| 220341.HCM1.45 | + | ||||
| 220341.STY3760 | + | ||||
| 220341.STY3790 | (PF00834) | ||||
| 220341.STY0099 | + | ||||
| 220341.STY2367 | + | ||||
| 220341.STY0701 | + | ||||
| 220341.STY2495 | + | ||||
| 220341.STY2494 | (+) | (ER) | |||
| 220341.STY2030 | + | ||||
| 220341.HCM1.175 | (PF13391) | ||||
| 220341.HCM1.177 | (PF13391) | ||||
| 220341.STY1602 | + | ||||
| 220341.HCM1.278c | + | ||||
| 220341.STY2920 | + | ||||
| 220341.STY1045 | + | ||||
| 220341.STY1049 | (<) | ||||
| 220341.STY0482 | + | ||||
| 220341.STY0483 | + | ||||
| 220341.STY4079 | (PF06176) | ||||
| 220341.STY3976 | + | ||||
| 220341.STY3979 | (>) | ||||
| 220341.STY0399 | + | ||||
| 220341.STY4746 | + | ||||
| 220341.STY4417 | + | ||||
| 220341.STY4528 | + | ||||
| 220341.STY4521 | + | ||||
| 220341.STY2829 | (>) | ||||
| 220341.STY3550 | + | ||||
| 220341.STY0779 | + | ||||
| 220341.STY4312 | + | ||||
| 220341.STY2730 | (PF02595) | ||||
| 220341.STY3395 | + | ||||
| 220341.STY3151 | (+) | + | |||
| 220341.STY2602 | + | ||||
| 220341.STY0955 | + | ||||
| 220341.STY2048 | + | ||||
| 220341.STY4410 | + | ||||
| 220341.HCM1.141 | + | ||||
| 220341.STY0225 | + | ||||
| 220341.STY1632 | + | ||||
| 220341.STY0550 | + | ||||
| 220341.STY1381 | + | ||||
| 220341.STY1703 | (>) | ||||
| 220341.STY1092 | + | ||||
| 220341.STY1141 | + | ||||
| 220341.STY1413 | + | ||||
| 220341.STY4649 | + | ||||
| 220341.STY1893 | + | ||||
| 220341.STY4732 | (PF03738) | ||||
| 220341.STY4733 | + | ||||
| 220341.STY4881 | (+) | + | |||
| 220341.STY4466 | + | ||||
| 220341.STY0165 | + | ||||
| 220341.STY0164 | (+) | (<) | |||
| 220341.STY4261 | (>) | ||||
| 220341.STY4005 | + | ||||
| 220341.HCM1.93 | + | ||||
| 220341.STY3676 | (PF05929) | ||||
| 220341.STY2862 | + | ||||
| 220341.STY1628 | + | ||||
| 220341.STY2986a | + | ||||
| 220341.STY2665 | + | ||||
| 220341.HCM1.02c | + | ||||
| 220341.STY1395 | (+) | (mitochondrial) | |||
| 220341.STY1716 | + | ||||
| 220341.STY1712 | + | ||||
| 220341.STY1083 | + | ||||
| 220341.STY3519 | + | ||||
| 220341.STY1217 | + | ||||
| 220341.STY1400 | + | ||||
| 220341.STY1156 | (PF10685) | not used | |||
| 220341.STY4657 | PF03400 | ||||
| 220341.STY0573 | (PF02595) | ||||
| 220341.STY4658 | + | ||||
| 220341.STY4473 | + | ||||
| 220341.STY1979 | (+) | (plastid) | |||
| 220341.STY0280 | + | ||||
| 220341.STY0285 | + | ||||
| 220341.STY3005 | + | ||||
| 220341.STY3009 | (PF07720) | ||||
| 220341.STY3418 | (PF03313) | ||||
| 220341.STY3480 | + | ||||
| 220341.STY2283 | + | ||||
| 220341.STY0627 | + | ||||
| 220341.STY2848 | (PF14328) | ||||
| 220341.HCM2.0117c | (PF00186) | ||||
| 220341.HCM1.126 | + | ||||
| 220341.HCM1.124 | + | ||||
| 220341.STY0836 | (<) | ||||
| 220341.STY1769 | + | ||||
| 220341.STY2300 | + | ||||
| 220341.STY3526 | + | ||||
| 220341.STY1164 | + | ||||
| 220341.STY0367 | (>) | ||||
| 220341.STY0366 | (>) | ||||
| 220341.STY0535 | + | ||||
| 220341.STY0102 | (PF00186) | ||||
| 220341.STY0104 | + | ||||
| 220341.STY0036 | (>) | ||||
| 220341.STY0585 | + | ||||
| 220341.STY4917 | + | ||||
| 220341.STY2984 | + | ||||
| 220341.STY3109 | + | ||||
| 220341.STY4544 | + | ||||
| 220341.STY2186 | + | ||||
| 220341.STY2182 | + | ||||
| 220341.STY2071 | PF04181 | not used | |||
| 220341.STY2077 | + | ||||
| 220341.STY2074 | + | ||||
| 220341.STY2277 | + | ||||
| 220341.HCM2.0109c | + | ||||
| 220341.HCM2.0096 | + | ||||
| 220341.HCM1.138 | + | ||||
| 220341.HCM1.139 | PF03400 | ||||
| 220341.STY4432 | + | ||||
| 220341.STY0404 | + | ||||
| 220341.STY0898 | + | ||||
| 220341.STY0915 | + | ||||
| 220341.STY1179 | (+) | (ER) | |||
| 220341.STY1191 | + | ||||
| 220341.STY0824 | + | ||||
| 220341.STY3738 | (<) | ||||
| 220341.STY0157 | (<) | ||||
| 220341.STY3830 | (<) | ||||
| 220341.STY4908 | + | ||||
| 220341.STY2467 | (+) | (plastid) | |||
| 220341.STY3115 | + | ||||
| 220341.HCM1.05c | + | ||||
| 220341.HCM1.180c | (+) | plastid | |||
| 220341.STY2880 | + | ||||
| 220341.STY1218 | + | ||||
| 220341.STY1211 | + | ||||
| 220341.STY2241 | + | ||||
| 220341.STY2246 | + | ||||
| 220341.STY3688 | + | ||||
| 220341.HCM1.107 | + | ||||
| 220341.STY0205 | (+) | (plastid) | |||
| 220341.STY2879 | + | ||||
| 220341.STY1981 | + | ||||
| 220341.STY1529 | (+) | (ER) | |||
| 220341.STY3630 | + | ||||
| 220341.STY0341 | (<) | ||||
| 220341.STY4600 | + | ||||
| 220341.STY0017 | + | ||||
| 220341.STY3475 | + | ||||
| 220341.STY3020 | + | ||||
| 220341.HCM2.0085c | + | ||||
| 220341.STY3307 | (+) | ||||
| 220341.HCM1.118 | (+) | ||||
| 220341.STY4288 | (+) | ||||
| 220341.STY0936 | (+) | ||||
| 220341.STY0933 | (+) | ||||
| 220341.STY3032 | (+) | ||||
| 220341.STY4046 | (+) | ||||
| 220341.STY1530 | (+) | ||||
| 220341.STY4109 | (+) | ||||
| 220341.STY0489 | (+) | ||||
| 220341.STY0243 | (+) | ||||
| 220341.STY4583 | (+) | ||||
| 220341.STY4585 | (+) | ||||
| 220341.STY3911 | (+) | ||||
| 220341.STY4612 | (+) | ||||
| 220341.STY4615 | (+) | ||||
| 220341.STY1828 | (+) | ||||
| 220341.STY4927 | (+) | ||||
| 220341.STY4925 | (+) | ||||
| 220341.HCM2.0086c | (+) | ||||
| 220341.STY3464 | (+) | ||||
| 220341.STY0862 | (+) | ||||
| 220341.STY3265 | (+) | ||||
| 220341.STY2981 | (+) | ||||
| 220341.STY1785 | (+) | ||||
| 220341.STY0326 | (+) | ||||
| 220341.STY3762 | (+) | ||||
| 220341.STY2677 | (+) | ||||
| 220341.STY3412 | (+) | ||||
| 220341.STY3416 | (+) | ||||
| 220341.STY0471 | (+) | ||||
| 220341.STY1121 | (+) | ||||
| 220341.STY1124 | (+) | not used | |||
| 220341.STY1125 | (+) | not used | |||
| 220341.STY3328 | (+) | ||||
| 220341.STY0038 | (+) | ||||
| 220341.HCM1.279bc | (+) | ||||
| 220341.STY1027 | (+) | ||||
| 220341.STY1798 | (+) | ||||
| 220341.STY1057 | (+) | ||||
| 220341.STY4630 | (+) | ||||
| 220341.STY0048 | (+) | ||||
| 220341.STY3661 | (+) | ||||
| 220341.STY4496 | (+) | ||||
| 220341.STY1809 | (+) | ||||
| 220341.STY2930 | (+) | ||||
| 220341.STY2931 | (+) | ||||
| 220341.STY0684 | (+) | ||||
| 220341.STY3880 | (+) | ||||
| 220341.STY2683 | (+) | ||||
| 220341.STY3536 | (+) | ||||
| 220341.STY4269 | (+) | ||||
| 220341.STY3330 | (+) | ||||
| 220341.STY1308 | (+) | ||||
| 220341.STY0307 | (+) | ||||
| 220341.STY0751 | (+) | ||||
| 220341.STY4158 | (+) | ||||
| 220341.STY2699 | (+) | ||||
| 220341.STY2696 | (+) | ||||
| 220341.STY4060 | (+) | ||||
| 220341.STY2109 | (+) | ||||
| 220341.STY1459 | (+) | ||||
| 220341.STY0410 | (+) | ||||
| 220341.STY4383 | (+) | ||||
| 220341.STY1642 | (+) | not used | |||
| 220341.STY4813 | (+) | ||||
| 220341.STY4815 | (+) | ||||
| 220341.STY0127 | (+) | ||||
| 220341.STY2050 | (+) | ||||
| 220341.STY0049 | (+) | ||||
| 220341.STY4364 | (+) | ||||
| 220341.STY0422 | (+) | ||||
| 220341.STY1918 | (+) | ||||
| 220341.STY0424 | (+) | ||||
| 220341.STY1914 | (+) | ||||
| 220341.STY1917 | (+) | ||||
| 220341.STY0736 | (+) | ||||
| 220341.STY2770 | (+) | ||||
| 220341.STY2006 | (+) | not used | |||
| 220341.STY2003 | (+) | ||||
| 220341.HCM1.181 | (+) | ||||
| 220341.STY0822 | (+) | ||||
| 220341.HCM1.34c | (+) | ||||
| 220341.STY4770 | (+) | ||||
| 220341.STY3986 | (+) | ||||
| 220341.STY3987 | (+) | ||||
| 220341.STY1856 | (+) | ||||
| 220341.STY1857 | (+) | ||||
| 220341.HCM2.0075c | + | ||||
| 220341.STY1010 | (+) | ||||
| 220341.STY1011 | (+) | ||||
| 220341.STY0439 | (+) | ||||
| 220341.STY3293 | (+) | ||||
| 220341.STY0727 | (+) | ||||
| 220341.STY2769 | (+) | ||||
| 220341.STY2168 | (+) | ||||
| 220341.STY3841 | (+) | ||||
| 220341.STY2515 | (+) | ||||
| 220341.STY2019 | (+) | ||||
| 220341.STY1117 | (+) | ||||
| 220341.STY3311 | (+) | ||||
| 220341.STY0305 | (+) | ||||
| 220341.STY3513 | (+) | ||||
| 220341.STY0086 | (+) | ||||
| 220341.STY0879 | (+) | ||||
| 220341.STY2714 | (+) | ||||
| 220341.STY3375 | (+) | ||||
| 220341.STY3173 | (+) | ||||
| 220341.STY1993 | (+) | ||||
| 220341.STY2157 | (+) | ||||
| 220341.STY2151 | (+) | ||||
| 220341.STY2397 | (+) | ||||
| 220341.STY4672 | (+) | ||||
| 220341.HCM1.161 | (+) | ||||
| 220341.HCM1.46 | (+) | ||||
| 220341.STY4401 | (+) | ||||
| 220341.STY3761 | (+) | ||||
| 220341.STY1944 | (+) | ||||
| 220341.STY4534 | (+) | ||||
| 220341.STY2703 | (+) | ||||
| 220341.STY2635 | (+) | ||||
| 220341.STY2045 | (+) | ||||
| 220341.STY2083 | (+) | ||||
| 220341.STY1429 | (+) | ||||
| 220341.STY1042 | (+) | ||||
| 220341.STY1044 | (+) | ||||
| 220341.STY4224 | (+) | ||||
| 220341.STY1048 | (+) | ||||
| 220341.STY1551 | (+) | ||||
| 220341.STY4074 | (+) | ||||
| 220341.STY3008 | (+) | ||||
| 220341.STY4525 | (+) | ||||
| 220341.STY0774 | (+) | ||||
| 220341.STY0609 | (+) | ||||
| 220341.STY3849 | (+) | ||||
| 220341.STY0304 | (+) | ||||
| 220341.STY2606 | (+) | ||||
| 220341.STY2044 | (+) | ||||
| 220341.STY0019 | (+) | ||||
| 220341.STY4206 | (+) | ||||
| 220341.STY1638 | (+) | not used | |||
| 220341.STY0066 | (+) | ||||
| 220341.STY1709 | (+) | ||||
| 220341.STY1147 | (+) | ||||
| 220341.HCM1.286c | (+) | ||||
| 220341.STY4463 | (+) | ||||
| 220341.STY3838 | (+) | ||||
| 220341.STY3495 | (+) | ||||
| 220341.STY1446 | (+) | ||||
| 220341.STY3125 | (+) | ||||
| 220341.STY2830 | (+) | ||||
| 220341.STY3189 | (+) | ||||
| 220341.STY1621 | (+) | ||||
| 220341.STY1627 | (+) | ||||
| 220341.STY3073 | (+) | ||||
| 220341.STY1390 | (+) | ||||
| 220341.STY4347 | (+) | ||||
| 220341.HCM1.288 | (+) | ||||
| 220341.STY1106 | (+) | ||||
| 220341.STY0117 | (+) | ||||
| 220341.STY0282 | (+) | ||||
| 220341.STY4099 | (+) | ||||
| 220341.STY2556 | (+) | ||||
| 220341.STY0755 | (+) | not used | |||
| 220341.STY0670 | (+) | ||||
| 220341.STY0599 | (+) | ||||
| 220341.STY3786 | (+) | ||||
| 220341.STY2994 | (+) | ||||
| 220341.STY2995 | (+) | ||||
| 220341.STY2996 | (+) | ||||
| 220341.HCM2.0042c | (+) | ||||
| 220341.HCM2.0081 | (+) | ||||
| 220341.STY2842 | (+) | ||||
| 220341.HCM2.0049c | (+) | ||||
| 220341.STY0837 | (+) | ||||
| 220341.STY1761 | (+) | ||||
| 220341.STY0968 | (+) | ||||
| 220341.STY3252 | (+) | ||||
| 220341.STY3997 | (+) | ||||
| 220341.STY0361 | (+) | ||||
| 220341.STY4712 | (+) | ||||
| 220341.STY3724 | (+) | not used | |||
| 220341.STY3580 | (+) | ||||
| 220341.STY0582 | (+) | ||||
| 220341.STY2292 | (+) | ||||
| 220341.STY2989 | (+) | ||||
| 220341.STY4446 | (+) | ||||
| 220341.STY2853 | (+) | ||||
| 220341.STY0891 | (+) | ||||
| 220341.STY4547 | (+) | ||||
| 220341.STY3215 | (+) | ||||
| 220341.STY2078 | (+) | not used | |||
| 220341.STY2075 | (+) | ||||
| 220341.STY1643 | (+) | ||||
| 220341.HCM1.132 | (+) | ||||
| 220341.STY4095 | (+) | ||||
| 220341.STY1517 | (+) | ||||
| 220341.STY1173 | (+) | ||||
| 220341.STY3380 | (+) | ||||
| 220341.STY0826 | (+) | ||||
| 220341.STY3930 | (+) | ||||
| 220341.STY4458 | (+) | ||||
| 220341.STY0643 | (+) | ||||
| 220341.STY0641 | (+) | ||||
| 220341.STY0647 | (+) | ||||
| 220341.STY2888 | (+) | ||||
| 220341.STY3446 | (+) | ||||
| 220341.STY0151 | (+) | ||||
| 220341.STY3208 | (+) | ||||
| 220341.STY4787 | (+) | ||||
| 220341.STY2249 | (+) | ||||
| 220341.HCM1.101 | (+) | ||||
| 220341.STY0363 | (+) | ||||
| 220341.STY1695 | (+) | ||||
| 220341.STY1349 | (+) | ||||
| 220341.STY4395 | (+) | ||||
| 220341.STY1980 | (+) | ||||
| 220341.STY2652 | (+) | ||||
| 220341.STY0348 | (+) | ||||
| 220341.STY3696 | (+) | ||||
| 220341.STY4842 | (+) | ||||
| 220341.STY1521 | (+) | ||||
| 220341.STY3205 | (+) | ||||
| 220341.STY4116 | (+) | ||||
| 220341.STY0018 | (+) | ||||
| 220341.STY3721 | (+) | ||||
| 220341.STY4592 | (+) | ||||
| 220341.STY4591 | (+) | ||||
| 220341.STY3907 | (+) | ||||
| 220341.STY4607 | (+) | ||||
| 220341.STY3059 | (+) | ||||
| 220341.STY3690 | (+) | ||||
| 220341.STY4930 | (+) | ||||
| 220341.STY1022 | (+) | ||||
| 220341.STY0292 | (+) | ||||
| 220341.STY1345 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 2.0 (20/10 KEGG proteins)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.1 (1/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.25 (10/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 2.0 (20/10 KEGG proteins)
Estimated copy number = 0.1 (1/10 KEGG proteins)
Estimated copy number = 1.25 (10/8 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
