Effective results for Neorickettsia sennetsu str. Miyayama (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 43
- Predicted by EffectiveELD: 1 eukaryotic-like domains, contained in 1 proteins (1 high, 0 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
222891.NSE_0664			+		ER
222891.NSE_0490			+		(mitochondrial); mitochondrial
222891.NSE_0104			+		ER
222891.NSE_0650			+		ER
222891.NSE_0423			+		ER
222891.NSE_0929			+		(mitochondrial)
222891.NSE_0398				PF02326	ER; (ER)
222891.NSE_0857			+		mitochondrial
222891.NSE_0847			+		ER
222891.NSE_0647			+
222891.NSE_0015			+
222891.NSE_0408			+
222891.NSE_0019			+
222891.NSE_0796			+
222891.NSE_0539			+
222891.NSE_0904			+
222891.NSE_0879			+
222891.NSE_0057			+
222891.NSE_0376			+
222891.NSE_0957			+
222891.NSE_0508			+
222891.NSE_0823			+
222891.NSE_0467			+
222891.NSE_0869			+
222891.NSE_0041			+
222891.NSE_0313			+
222891.NSE_0068			+
222891.NSE_0438			+
222891.NSE_0444			+
222891.NSE_0607			+
222891.NSE_0605			+
222891.NSE_0299			+
222891.NSE_0844			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.3 (13/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================