Effective results for Brucella melitensis bv. 1 str. 16M (eggnog40)

Summary

Number of putative secreted proteins: 62
- Predicted by T4SEpre: 69
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 8 proteins (0 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
224914.BAWG_1062				(PF06455)	ER
224914.BAWG_1125			+		ER
224914.BAWG_0756			+		(ER)
224914.BAWG_2758			+		ER; (ER)
224914.BAWG_1237			+		mitochondrial
224914.BAWG_2588			+		ER
224914.BAWG_2507			+		ER
224914.BAWG_1143			+		(mitochondrial); mitochondrial
224914.BAWG_1155			+		ER
224914.BAWG_1526			+		ER; (ER)
224914.BAWG_2576			+		ER
224914.BAWG_2372			+		ER
224914.BAWG_1448			+		ER
224914.BAWG_1517			+		(mitochondrial); (plastid)
224914.BAWG_0496			+		ER
224914.BAWG_2400			+		mitochondrial; (mitochondrial)
224914.BAWG_0616			+		(mitochondrial)
224914.BAWG_1244			+	(PF01442)
224914.BAWG_2441			+		(mitochondrial)
224914.BAWG_0983				(PF13207)	(mitochondrial)
224914.BAWG_2925			+		(mitochondrial)
224914.BAWG_0547			+		(mitochondrial)
224914.BAWG_2397				(PF01755)
224914.BAWG_2398			+
224914.BAWG_0828			+
224914.BAWG_0019				(PF09731)
224914.BAWG_2672			+
224914.BAWG_1262			+
224914.BAWG_1860			+
224914.BAWG_2282			+
224914.BAWG_1257			+
224914.BAWG_2850			+
224914.BAWG_2100			+
224914.BAWG_0991			+
224914.BAWG_0183			+
224914.BAWG_2521			+
224914.BAWG_2704			+
224914.BAWG_2934			+
224914.BAWG_2481			+
224914.BAWG_0952			+
224914.BAWG_0887				(PF01755)
224914.BAWG_1174			+
224914.BAWG_0316			+
224914.BAWG_1704			+
224914.BAWG_0237			+
224914.BAWG_2548			+
224914.BAWG_2740			+
224914.BAWG_2756			+
224914.BAWG_2752			+
224914.BAWG_3019			+
224914.BAWG_1507			+
224914.BAWG_2213				(PF07930)
224914.BAWG_2710			+
224914.BAWG_2358			+
224914.BAWG_0807			+
224914.BAWG_1046			+
224914.BAWG_1854			+
224914.BAWG_1428			+
224914.BAWG_2713			+
224914.BAWG_1284			+
224914.BAWG_0623				(PF01755)
224914.BAWG_0530			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.7 (7/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================