Effective results for Marinobacter adhaerens HP15 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 30 proteins (1 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
225937.HP15_3239				(PF06241)	mitochondrial
225937.HP15_2607				(PF14870)	ER
225937.HP15_3089				(PF00209)	ER
225937.HP15_3411				(PF13857)	ER
225937.HP15_2406				(PF10996)	mitochondrial
225937.HP15_1067				(PF14870)	ER
225937.HP15_2720				PF04387	ER
225937.HP15_9				(PF14870)	mitochondrial; (mitochondrial)
225937.HP15_2864				(PF14832)	plastid
225937.HP15_2716				(PF12483)	(ER)
225937.HP15_2469				(PF02130)	not used
225937.HP15_2468				(PF02130)
225937.HP15_1010				(PF00209)
225937.HP15_810				(PF03015)
225937.HP15_2624				(PF00209)
225937.HP15_3393				(PF12038)
225937.HP15_2380				(PF10996)
225937.HP15_1859				(PF11815)
225937.HP15_3916				(PF00209)
225937.HP15_1198				(PF09588)
225937.HP15_3292				(PF13875)
225937.HP15_857				(PF00209)
225937.HP15_3838				(PF13857)
225937.HP15_4022				(PF14870)
225937.HP15_1090				(PF09588)
225937.HP15_131				(PF09588)
225937.HP15_1324				(PF10996)
225937.HP15_1593				(PF11815)
225937.HP15_4137				(PF16983)
225937.HP15_1205				(PF13857)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 1.625 (13/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================