Effective results for Hyphomonas neptunium ATCC 15444 (eggnog40)

Summary

Number of putative secreted proteins: 14
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 14 proteins (2 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
228405.HNE_1472(PF14330)(mitochondrial)
228405.HNE_0040(PF00030)ER
228405.HNE_0042(PF00030)ER
228405.HNE_2745PF14295ER
228405.HNE_0753PF14295ER
228405.HNE_1089(PF07045)(mitochondrial)
228405.HNE_2821(PF00050)ER
228405.HNE_1460(PF07045)
228405.HNE_1664(PF07045)
228405.HNE_2761(PF13415)
228405.HNE_0653(PF07045)
228405.HNE_2712(PF13910)
228405.HNE_1215(PF07045)
228405.HNE_2798(PF03031)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================