Effective results for Haemophilus ducreyi 35000HP (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 13 proteins (0 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
233412.HD0883(PF01755)mitochondrial
233412.HD1616(PF12762)(mitochondrial)
233412.HD1327(PF13332)ER
233412.HD1696(PF12762)mitochondrial; (mitochondrial)
233412.HD0290(PF12762)mitochondrial; (mitochondrial)
233412.HD1612(PF12762)(plastid)
233412.HD1689(PF12762)(ER)
233412.HD1156(PF13332)(mitochondrial)
233412.HD1505(PF13332)(mitochondrial)
233412.HD1721(PF01755)
233412.HD1542(PF12721)
233412.HD0374(PF10063)
233412.HD0472(PF01755)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================