Effective results for Anaplasma marginale str. St. Maries (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 47
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 7 proteins (1 high, 6 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
234826.AM871			+		mitochondrial; (mitochondrial)
234826.AM490			+		ER
234826.AM823			+		(mitochondrial)
234826.AM1119			+		ER
234826.AM368			+		(mitochondrial)
234826.AM1292			+		ER
234826.AM1046			+		ER; (ER)
234826.AM854			+		ER
234826.AM113			+		ER
234826.AM148			+		ER; (ER)
234826.AM354			+		(ER)
234826.AM975			+		plastid
234826.AM034			+		(mitochondrial)
234826.AM291			+		(plastid)
234826.AM801			+		(mitochondrial)
234826.AM387			+
234826.AM712			+
234826.AM475			+
234826.AM470			+
234826.AM1243			+
234826.AM356			+
234826.AM568				(PF11987)
234826.AM1113				PF02326
234826.AM180			+
234826.AM735				(PF11987)
234826.AM601				(PF01018)
234826.AM133			+
234826.AM1228			+
234826.AM858				(PF01018)
234826.AM920			+
234826.AM615			+
234826.AM1311				(PF00707)
234826.AM294			+
234826.AM1141			+
234826.AM705			+
234826.AM410			+
234826.AM024			+
234826.AM1108			+
234826.AM842			+
234826.AM1274				(PF00707)
234826.AM185			+
234826.AM949			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.3 (13/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================