Effective results for Burkholderia mallei ATCC 23344 (eggnog40)

Summary

Number of putative secreted proteins: 780
- Predicted by EffectiveT3: 154 (high confidence), 255 (low confidence)
- Predicted by EffectiveCCBD: 14 within, 7 before, 34 behind expected region 25..70aa
- Predicted by T4SEpre: 99
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 254 proteins (223 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
243160.BMAA1378				PF13683 PF13276	(mitochondrial)
243160.BMA2723			+		ER; (ER)
243160.BMA0441				PF13683 PF13276	(mitochondrial)
243160.BMA1375			+		(mitochondrial)
243160.BMA3394				PF13683 PF13276	(mitochondrial)
243160.BMAA1897	(+)		+		(mitochondrial); (plastid)
243160.BMA1478				PF13683 PF13276	(mitochondrial)
243160.BMA2283				PF13683 PF13276	(mitochondrial)
243160.BMA2759				PF13683 PF13276	(mitochondrial)
243160.BMAA1789				PF13683 PF13276	(mitochondrial)
243160.BMAA0413				PF13683 PF13276	(mitochondrial)
243160.BMA2527				PF13683 PF13276	(mitochondrial)
243160.BMA2834				PF13683 PF13276	(mitochondrial)
243160.BMAA1099		+			(mitochondrial)
243160.BMA0456			+		(mitochondrial)
243160.BMAA1945			+		mitochondrial
243160.BMA1083				PF13683 PF13276	(mitochondrial)
243160.BMA0110				PF13683 PF13276	(mitochondrial)
243160.BMA0274	+				mitochondrial; (mitochondrial)
243160.BMA1141.1			+		mitochondrial; (mitochondrial)
243160.BMAA0174				PF13683 PF13276	(mitochondrial)
243160.BMAA1227				PF13683 PF13276	(mitochondrial)
243160.BMA0598		(>)			mitochondrial
243160.BMA2252			+		(mitochondrial)
243160.BMA1077				PF13683 PF13276	(mitochondrial)
243160.BMA3006				PF13683 PF13276	(mitochondrial)
243160.BMAA1947				PF13683 PF13276	(mitochondrial)
243160.BMA2199				PF13683 PF13276	(mitochondrial)
243160.BMA2351				(PF08857)	ER
243160.BMA3351				PF13683 PF13276	(mitochondrial)
243160.BMA0321				PF13683 PF13276	(mitochondrial)
243160.BMA2779		(>)			mitochondrial
243160.BMA0857				PF13683 PF13276	(mitochondrial)
243160.BMAA1308				PF13683 PF13276	(mitochondrial)
243160.BMAA0436				PF13683 PF13276	(mitochondrial)
243160.BMA1216				PF13683 PF13276	(mitochondrial)
243160.BMAA1054				PF13683 PF13276	(mitochondrial)
243160.BMA0131				PF13683 PF13276	(mitochondrial)
243160.BMA0005				PF13683 PF13276	(mitochondrial)
243160.BMA1537				(PF05023)	ER
243160.BMAA0555				PF13683 PF13276	(mitochondrial)
243160.BMAA0552				PF13683 PF13276	(mitochondrial)
243160.BMAA0083				PF13683 PF13276	(mitochondrial)
243160.BMAA0887				PF13683 PF13276	(mitochondrial)
243160.BMA1841				PF13683 PF13276	(mitochondrial)
243160.BMAA1339		+			ER
243160.BMAA0423			+		mitochondrial
243160.BMA1203				PF13683 PF13276	(mitochondrial)
243160.BMA0483				PF13683 PF13276	(mitochondrial)
243160.BMA2508			+		mitochondrial; (mitochondrial)
243160.BMAA0890				PF13683 PF13276	(mitochondrial)
243160.BMA3026				PF13683 PF13276	(mitochondrial)
243160.BMA2087				PF13683 PF13276	(mitochondrial)
243160.BMAA0489			+		mitochondrial
243160.BMA2793				PF13683 PF13276	(mitochondrial)
243160.BMA2564				PF13683 PF13276	(mitochondrial)
243160.BMA1232				PF13683 PF13276	(mitochondrial)
243160.BMA2899				PF13683 PF13276	(mitochondrial)
243160.BMA0495				PF13683 PF13276	(mitochondrial)
243160.BMA0948				PF13683 PF13276	(mitochondrial)
243160.BMAA1412				PF13683 PF13276	(mitochondrial)
243160.BMA1041				PF13683 PF13276	(mitochondrial)
243160.BMA0806				PF13683 PF13276	(mitochondrial)
243160.BMAA0194			+		mitochondrial; (mitochondrial)
243160.BMAA0992				PF13683 PF13276	(mitochondrial)
243160.BMA1954				PF13683 PF13276	(mitochondrial)
243160.BMAA1005				PF13683 PF13276	(mitochondrial)
243160.BMAA0845				PF13683 PF13276	(mitochondrial)
243160.BMAA0840			+		(mitochondrial); mitochondrial
243160.BMA0573				PF13683 PF13276	(mitochondrial)
243160.BMAA1901	+		+		(plastid)
243160.BMAA2092			+		(ER)
243160.BMA1763		(>)			ER
243160.BMA0586				PF13683 PF13276	(mitochondrial)
243160.BMA2225				PF13683 PF13276	(mitochondrial)
243160.BMAA0276				PF13683 PF13276	(mitochondrial)
243160.BMA1277	(+)		+		(mitochondrial); (plastid)
243160.BMA3091				PF13683 PF13276	(mitochondrial)
243160.BMA0684			+		mitochondrial
243160.BMA2237				(PF01610)	(ER)
243160.BMA2231	+				(mitochondrial); (plastid)
243160.BMA1709			+		(mitochondrial)
243160.BMAA0609				(PF09458)	mitochondrial
243160.BMAA1975.1	+				(mitochondrial); plastid
243160.BMA1975				PF13683 PF13276	(mitochondrial)
243160.BMAA1644				PF13683 PF13276	(mitochondrial)
243160.BMAA1242			+		ER
243160.BMAA1023				PF13683 PF13276	(mitochondrial)
243160.BMA2687				PF13683 PF13276	(mitochondrial)
243160.BMAA0869				PF13683 PF13276	(mitochondrial)
243160.BMA1012	+				mitochondrial
243160.BMA2595				PF13683 PF13276	(mitochondrial)
243160.BMA1876		(>)			ER
243160.BMA0235	+	+			(plastid)
243160.BMA2655				PF13683 PF13276	(mitochondrial)
243160.BMAA0497				PF13683 PF13276	(mitochondrial)
243160.BMAA0811				PF13683 PF13276	(mitochondrial)
243160.BMA2695			+		(mitochondrial)
243160.BMA0500				PF13683 PF13276	(mitochondrial)
243160.BMA0436			+		ER
243160.BMA0757				PF13683 PF13276	(mitochondrial)
243160.BMA1759				PF13683 PF13276	(mitochondrial)
243160.BMA2217		+			(mitochondrial)
243160.BMA3183			+		ER
243160.BMA2103	+				ER; (ER)
243160.BMA0245	+				(mitochondrial); plastid
243160.BMA2078		(>)			(ER)
243160.BMAA0486		+			ER
243160.BMAA0318		(>)			mitochondrial
243160.BMA2491			+		ER
243160.BMA2268				PF13683 PF13276	(mitochondrial)
243160.BMA3195		(>)			ER
243160.BMA1439		(>)			ER
243160.BMAA0724				PF13683 PF13276	(mitochondrial)
243160.BMAA0342				PF13683 PF13276	(mitochondrial)
243160.BMA2671		+			(ER)
243160.BMAA1741				PF13683 PF13276	(mitochondrial)
243160.BMA1337			+		ER
243160.BMA1119				PF13683 PF13276	(mitochondrial)
243160.BMAA0308			+		ER
243160.BMA3290			+		mitochondrial
243160.BMA3164.1	+				(mitochondrial)
243160.BMA0266				PF13683 PF13276	(mitochondrial)
243160.BMAA0647				PF13683 PF13276	(mitochondrial)
243160.BMA1281			+		(ER); ER
243160.BMAA1512				PF13683 PF13276	(mitochondrial)
243160.BMAA1175				PF13683 PF13276	(mitochondrial)
243160.BMAA0918				PF13683 PF13276	(mitochondrial)
243160.BMAA2073				PF13683 PF13276	(mitochondrial)
243160.BMA0721				PF13683 PF13276	(mitochondrial)
243160.BMAA0881		+			mitochondrial; (mitochondrial)
243160.BMA0658				PF13683 PF13276	(mitochondrial)
243160.BMA2249				PF13683 PF13276	(mitochondrial)
243160.BMA3264			+		mitochondrial; (mitochondrial)
243160.BMAA0105				PF13683 PF13276	(mitochondrial)
243160.BMAA0584				PF13683 PF13276	(mitochondrial)
243160.BMAA1502			+		mitochondrial; (mitochondrial)
243160.BMAA1503				PF13683 PF13276	(mitochondrial)
243160.BMA0899				PF13683 PF13276	(mitochondrial)
243160.BMAA1185			+		ER; (ER)
243160.BMA1238		(>)			ER; mitochondrial
243160.BMAA1760				PF13683 PF13276	(mitochondrial)
243160.BMA1257				PF13683 PF13276	(mitochondrial)
243160.BMA0710			+		mitochondrial
243160.BMA1409				PF13683 PF13276	(mitochondrial)
243160.BMA0284				PF13683 PF13276	(mitochondrial)
243160.BMA0209		+			ER
243160.BMA2626	(+)				mitochondrial; (mitochondrial)
243160.BMAA0685	(+)	(>)			(plastid)
243160.BMA3241				(PF01610)	(mitochondrial)
243160.BMA2639				(PF01610)	(mitochondrial)
243160.BMAA1369			+		(mitochondrial)
243160.BMAA0418	+				(plastid)
243160.BMA0450	+		+
243160.BMA1512				(PF01610)	(mitochondrial)
243160.BMA1863				(PF01610)	(mitochondrial)
243160.BMAA1316	(+)				(mitochondrial)
243160.BMA0590	(+)				ER; (ER)
243160.BMA1894.2	+				plastid
243160.BMAA1944	(+)				(ER)
243160.BMA0614	+				(plastid)
243160.BMAA1102	(+)				(mitochondrial)
243160.BMAA1123				(PF01610)	(mitochondrial)
243160.BMA1663	+				(plastid)
243160.BMA3032	+				plastid
243160.BMA0130				(PF10908)	(plastid)
243160.BMA0133				(PF01610)	(mitochondrial)
243160.BMAA1111	+			(PF10462)
243160.BMA0952			+		(mitochondrial)
243160.BMAA0712	(+)				ER
243160.BMA1230				(PF01610)	(mitochondrial)
243160.BMA1233	(+)			(PF01610)	(mitochondrial)
243160.BMAA1213				(PF01610)	(mitochondrial)
243160.BMA0794				(PF10908)	(plastid)
243160.BMA2090				(PF01610)	(mitochondrial)
243160.BMA2097	+				plastid
243160.BMA2956		(<)	+
243160.BMA1037	(+)				mitochondrial
243160.BMA0384	(+)				(mitochondrial)
243160.BMAA2054	(+)				(ER); plastid
243160.BMA0366	(+)				(ER)
243160.BMAA1675	+			(PF10908)
243160.BMAA1279			+		(mitochondrial)
243160.BMA2438				(PF01610)	(mitochondrial)
243160.BMA0561	+				(plastid)
243160.BMA3327	+		+
243160.BMAA0464		(>)			(plastid)
243160.BMA1016				(PF01610)	(mitochondrial)
243160.BMAA0057.1			+		(plastid)
243160.BMA1111	(+)				(mitochondrial); (plastid)
243160.BMA0502	(+)				(mitochondrial); (plastid)
243160.BMAA0810	+				plastid
243160.BMA3181				(PF01610)	(mitochondrial)
243160.BMAA1281	(+)				mitochondrial; plastid
243160.BMAA1299	(+)				(ER)
243160.BMA3388	(+)		+		(plastid)
243160.BMAA1997	+			(PF12588)
243160.BMA1730			+		(plastid)
243160.BMAA1870			+		(mitochondrial)
243160.BMA1493	+				(plastid)
243160.BMAA0516	+				(mitochondrial)
243160.BMA1934				(PF01610)	(mitochondrial)
243160.BMA2520		(>)			(mitochondrial)
243160.BMAA2072				(PF01610)	(mitochondrial)
243160.BMAA0031	(+)				mitochondrial; (mitochondrial)
243160.BMA0470				(PF01610)	(mitochondrial)
243160.BMAA2028.1			+		(mitochondrial)
243160.BMAA1374	+
243160.BMAA1377				PF01527
243160.BMA2728	(+)				(plastid)
243160.BMAA0110		(>)
243160.BMAA0682	(+)		+
243160.BMA0666	+
243160.BMAA1790				PF13683
243160.BMAA1085	+
243160.BMAA2052	+
243160.BMA0442				PF01527
243160.BMAA0752	(+)				(plastid)
243160.BMA0709	+
243160.BMA1986	(+)				plastid
243160.BMA3060			+
243160.BMA0676				PF05598
243160.BMAA1964	+
243160.BMAA1968				PF05598
243160.BMA3393				PF01527
243160.BMA2477	+
243160.BMA1479				PF01527
243160.BMA0051				PF05598
243160.BMA1503				PF05598
243160.BMA1500				PF05598
243160.BMAA0353	+
243160.BMA2288	(+)				(plastid)
243160.BMA2284				PF01527
243160.BMA2287			+
243160.BMA2753				PF05598
243160.BMA1891			+
243160.BMAA0167	+
243160.BMAA1565	+
243160.BMAA1566	+
243160.BMAA1368				(PF10703)
243160.BMAA1788				PF01527
243160.BMAA0414				PF01527
243160.BMA2835				PF01527
243160.BMA1271				(PF08857)
243160.BMA1276	+
243160.BMA0265				PF01527
243160.BMAA1946				PF01527
243160.BMA0454	+
243160.BMAA0410			+
243160.BMA1082				PF01527
243160.BMA0111				PF01527
243160.BMA2510	+
243160.BMA3239				PF05598
243160.BMA1513	(+)				(mitochondrial)
243160.BMA1450		(<)
243160.BMAA0170				PF05598
243160.BMAA0172	+
243160.BMAA0175				PF01527
243160.BMAA0177	+
243160.BMAA1226				PF01527
243160.BMA0848	+
243160.BMAA0004	+
243160.BMAA0400	+
243160.BMA1265				PF05598
243160.BMAA0794				(PF11805)
243160.BMA1268	(+)		+
243160.BMAA2035			+
243160.BMA2469	+
243160.BMA1078				PF01527
243160.BMA3002			+
243160.BMA3007				PF01527
243160.BMA0882	+
243160.BMAA0788	+
243160.BMA3134	+
243160.BMA3139				PF05598
243160.BMA2194	(+)				(mitochondrial)
243160.BMA2191			+
243160.BMA2198				PF01527
243160.BMA3352				PF01527
243160.BMA0322				PF01527
243160.BMAA0981	+
243160.BMA0858				PF01527
243160.BMAA0891				PF01527
243160.BMA1982	+
243160.BMAA1302			+
243160.BMAA1121				PF05598
243160.BMAA1124	(+)				plastid
243160.BMAA0437				PF01527
243160.BMA1217				PF01527
243160.BMA1215		(>)
243160.BMAA2021			+
243160.BMAA1055				PF01527
243160.BMA1324	+
243160.BMA1322	+
243160.BMA2982				PF05598
243160.BMA1661	(+)				plastid
243160.BMA1666	(+)				(mitochondrial)
243160.BMA2898				PF01527
243160.BMA0271			+
243160.BMA1689			+
243160.BMA1685	(+)				plastid
243160.BMA2189	+
243160.BMA2340				PF05598
243160.BMA3216				PF05598
243160.BMA0004				PF01527
243160.BMAA0715		(>)
243160.BMA3348	(+)				plastid
243160.BMA3361				PF05598
243160.BMAA0556				PF01527
243160.BMAA0551				PF01527
243160.BMAA0082				PF01527
243160.BMA2760				PF01527
243160.BMA2767	(+)				(plastid)
243160.BMA2765	+
243160.BMAA0332				PF05598
243160.BMAA0886				PF01527
243160.BMA1842				PF01527
243160.BMA1848	+
243160.BMAA1337	+
243160.BMAA1687			+
243160.BMA1204				PF01527
243160.BMA0484				PF01527
243160.BMA0488				PF05598
243160.BMA2978	(+)	(>)
243160.BMA1122	+
243160.BMA3025				PF01527
243160.BMA3114	+
243160.BMAA1850	(+)				plastid
243160.BMA2378	+
243160.BMA3329	(+)		+
243160.BMA2086				PF01527
243160.BMA1972	+
243160.BMA0301	+
243160.BMAA0528	+
243160.BMAA0527	+
243160.BMA2792				PF01527
243160.BMA2790				PF05598
243160.BMA3240	+
243160.BMAA1307				PF01527
243160.BMA0839		(<)
243160.BMA2563				PF05598
243160.BMA2896	+
243160.BMA0496				PF01527
243160.BMA0949				PF01527
243160.BMA2418				PF05598
243160.BMAA1588	+
243160.BMA1307	+				not used
243160.BMAA1538	+
243160.BMA1040				PF01527
243160.BMA2912				PF05598
243160.BMA0541		(>)
243160.BMAA1865	+
243160.BMA2362				PF05598
243160.BMA1556		(>)
243160.BMA2094	+
243160.BMA3306	+
243160.BMA0373			+
243160.BMA1701	+
243160.BMA2142	+
243160.BMA0203	+
243160.BMA0805				PF01527
243160.BMAA0600			+
243160.BMA1827		(>)
243160.BMA1826		(>)
243160.BMA2575		(>)
243160.BMAA0991				PF01527
243160.BMA1953				PF01527
243160.BMA0973	(+)		+
243160.BMAA1004				PF01527
243160.BMAA0846				PF01527
243160.BMAA0376	+
243160.BMAA1488	+
243160.BMA0574				PF01527
243160.BMA1494	+
243160.BMA0585				PF01527
243160.BMA0548			+
243160.BMA2314	+
243160.BMA1413	+
243160.BMAA1642	+
243160.BMA1760				PF01527
243160.BMAA1646		+
243160.BMA2227				PF05598
243160.BMA2224				PF01527
243160.BMA3319	+
243160.BMA0362		(<)
243160.BMAA0500	+
243160.BMA2891	+
243160.BMA0816		(>)
243160.BMA2601	+
243160.BMAA1499	+
243160.BMA2047	(+)				(ER)
243160.BMA2044	(+)				(mitochondrial)
243160.BMA2043	+
243160.BMAA0275				PF01527
243160.BMAA1015	+				not used
243160.BMA2439	+
243160.BMAA0878				PF05598
243160.BMA1365			+
243160.BMAA0870				PF01527
243160.BMAA0872				PF05598
243160.BMAA2115			+
243160.BMAA2116				PF05598
243160.BMAA2117	(+)				plastid
243160.BMAA1411				PF01527
243160.BMA3143	+
243160.BMA2521		(>)
243160.BMAA1804				PF05598
243160.BMA2529				PF01527
243160.BMAA1869			+
243160.BMA3092				PF01527
243160.BMA3326	(+)				(plastid)
243160.BMA3322	+
243160.BMA0353	+
243160.BMA2565				PF01527
243160.BMA0220	+
243160.BMAA0608	(+)				(plastid)
243160.BMAA0605	+
243160.BMA0132				PF01527
243160.BMAA0286	+
243160.BMAA1641	+
243160.BMA1974				PF01527
243160.BMAA1645				PF01527
243160.BMAA1648	+
243160.BMAA1248			+
243160.BMAA1024				PF01527
243160.BMAA0213			+
243160.BMA2688				PF01527
243160.BMA0510		(>)
243160.BMA0517	+
243160.BMA2596				PF01527
243160.BMA2597	(+)				(ER)
243160.BMAA0265		(>)
243160.BMA1162		(>)
243160.BMA0429	+
243160.BMA0426				PF05598
243160.BMA2848		(>)
243160.BMAA1296	+
243160.BMA0161			+
243160.BMA0168				PF05598
243160.BMA0760	+
243160.BMAA1693		+
243160.BMA1585				PF05598
243160.BMAA0568.1	+
243160.BMA0697	+
243160.BMA1742				PF05598
243160.BMA2203	+
243160.BMA3330	+
243160.BMA3334	+
243160.BMA0344	(+)				(plastid)
243160.BMA2116	+
243160.BMAA0677	+
243160.BMA2654				PF01527
243160.BMAA1350			+
243160.BMAA1669	+
243160.BMA1871	(+)				plastid
243160.BMAA0498				PF01527
243160.BMAA0738			+
243160.BMAA1031	+
243160.BMA1345	+
243160.BMAA0812				PF01527
243160.BMAA0212		(>)
243160.BMA0501				PF01527
243160.BMAA0925	(+)	(>)
243160.BMA0629	(+)	(>)
243160.BMA2895			+
243160.BMA0755	+
243160.BMA0758				PF01527
243160.BMAA0445			+
243160.BMAA0446			+
243160.BMA1594	+
243160.BMA1751	+
243160.BMA1750	+
243160.BMA3182				PF05598
243160.BMA2817	+				not used
243160.BMAA0089	+
243160.BMAA0661	(+)				(mitochondrial)
243160.BMAA0665			+
243160.BMA2075	+
243160.BMAA0249			+
243160.BMAA0391			+
243160.BMAA1532				(PF07720)
243160.BMA2661				(PF10703)
243160.BMAA2060	(+)				(plastid)
243160.BMA1136	+
243160.BMAA1759				PF01527
243160.BMA0530	+
243160.BMAA0932	+
243160.BMAA1487	+
243160.BMA2482	+
243160.BMA2481	+
243160.BMAA1832	+
243160.BMA2269				PF01527
243160.BMA3196	+
243160.BMA3193	+
243160.BMAA1906	+
243160.BMAA0655		(<)			not used
243160.BMAA0656	+				not used
243160.BMAA0651			+
243160.BMAA0652		(<)
243160.BMA0295.1		(>)
243160.BMAA1909	+
243160.BMA1295				PF01527
243160.BMAA0725				PF01527
243160.BMAA0728	+
243160.BMAA0239	+
243160.BMAA2091	+
243160.BMA2904	+
243160.BMAA1682	(+)				(plastid)
243160.BMAA1740				PF01527
243160.BMAA0909			+
243160.BMA2874	+
243160.BMA2873	+
243160.BMA1118				PF01527
243160.BMA3336	+
243160.BMA1498			+
243160.BMAA0231	(+)				(plastid)
243160.BMA3291				PF05598
243160.BMA0082				PF05598
243160.BMAA1990		+
243160.BMA1732		(<)
243160.BMA1739				PF05598
243160.BMA2278				PF05598
243160.BMA1738	+
243160.BMA1427	+
243160.BMAA1978		+
243160.BMA0524	+
243160.BMAA0648				PF01527
243160.BMA1338			+
243160.BMAA0734	(+)				plastid
243160.BMAA0735	+
243160.BMA2705	(+)	+
243160.BMAA1662	+
243160.BMAA1513				PF01527
243160.BMAA0823			+
243160.BMAA1174				PF01527
243160.BMAA0917				PF01527
243160.BMA2803				PF05598
243160.BMA2805	(+)				(plastid)
243160.BMAA2075				PF05598
243160.BMAA2074				PF01527
243160.BMAA2003	+
243160.BMAA0314	+				not used
243160.BMA0729	+
243160.BMA0728				PF05598
243160.BMA0720				PF01527
243160.BMAA2087	+
243160.BMA3281	+
243160.BMA3288			+
243160.BMA1708	(+)	(>)
243160.BMA0659				PF01527
243160.BMA0388				PF05598
243160.BMA0381				PF05598
243160.BMA1410				PF01527
243160.BMAA0106				PF01527
243160.BMAA0108			+
243160.BMAA0219			+
243160.BMAA0747			+
243160.BMAA0196	+
243160.BMAA0583				PF01527
243160.BMA2731	+
243160.BMAA1506				PF05598
243160.BMAA1504				PF01527
243160.BMA0898				PF01527
243160.BMAA0691				(PF08123)
243160.BMAA0697		+
243160.BMA1256				PF01527
243160.BMAA0057	+
243160.BMAA0977	+
243160.BMA1718				PF05598
243160.BMAA1971	+
243160.BMA1715				PF05598
243160.BMA1938	+
243160.BMA2250				PF01527
243160.BMA1231				PF01527
243160.BMA2258		(>)
243160.BMA3387	+
243160.BMA0285				PF01527
243160.BMA3250	+
243160.BMA3253			+
243160.BMA0044		(>)
243160.BMA2391	+
243160.BMAA0750	(+)
243160.BMAA1047	(+)
243160.BMAA0594	(+)
243160.BMA0934	(+)
243160.BMAA0927	(+)
243160.BMA1382	(+)
243160.BMA0706	(+)
243160.BMA0677	(+)
243160.BMA0289	(+)
243160.BMA0298	(+)
243160.BMA0053	(+)
243160.BMA0052	(+)
243160.BMAA0379	(+)
243160.BMAA0561	(+)
243160.BMAA1492	(+)
243160.BMA2637	(+)
243160.BMAA1786	(+)
243160.BMAA1149	(+)
243160.BMA2524	(+)
243160.BMAA0732	(+)
243160.BMA1057	(+)
243160.BMA0276	(+)
243160.BMA3126	(+)
243160.BMA3127	(+)
243160.BMA1468	(+)
243160.BMAA1444	(+)
243160.BMA3234	(+)
243160.BMA0024	(+)
243160.BMAA0586	(+)				not used
243160.BMAA0178	(+)				not used
243160.BMA1887	(+)
243160.BMA0840	(+)
243160.BMAA1421	(+)
243160.BMAA1424	(+)
243160.BMA1676	(+)
243160.BMA1671	(+)
243160.BMA0611	(+)
243160.BMA3132	(+)
243160.BMA0100	(+)
243160.BMA0262	(+)				not used
243160.BMA2350	(+)
243160.BMA2399	(+)
243160.BMAA1106	(+)
243160.BMAA0324	(+)
243160.BMAA1549	(+)
243160.BMAA0439	(+)
243160.BMA1060	(+)
243160.BMA1482	(+)
243160.BMA0001	(+)
243160.BMA0003	(+)
243160.BMAA0153	(+)
243160.BMAA0158	(+)
243160.BMA0946	(+)
243160.BMAA1336	(+)
243160.BMA1991	(+)
243160.BMA1997	(+)
243160.BMAA1681	(+)
243160.BMAA2019	(+)				not used
243160.BMA1343	(+)
243160.BMA1055	(+)
243160.BMAA1929	(+)
243160.BMA0630	(+)
243160.BMAA1510	(+)
243160.BMA3279	(+)
243160.BMA3111	(+)
243160.BMA0125	(+)
243160.BMAA1854	(+)
243160.BMA3247	(+)
243160.BMA0382	(+)
243160.BMAA1320	(+)
243160.BMAA1459	+
243160.BMAA0980	(+)
243160.BMA1947	(+)
243160.BMA2505	(+)
243160.BMA1308	(+)
243160.BMA2969	(+)
243160.BMA2968	(+)
243160.BMAA1914	(+)
243160.BMAA1913	(+)
243160.BMA0098	(+)
243160.BMA2099	(+)
243160.BMA0652	(+)
243160.BMA0204	(+)
243160.BMA1220	(+)
243160.BMAA1262	(+)
243160.BMAA1003	(+)
243160.BMA2427	(+)
243160.BMAA2102	(+)
243160.BMA0781	(+)
243160.BMA2318	(+)
243160.BMA2315	(+)
243160.BMA1568	(+)
243160.BMA1569	(+)
243160.BMA1565	(+)
243160.BMA1566	(+)
243160.BMA2804	(+)
243160.BMA2913	(+)
243160.BMAA0798	(+)
243160.BMA2489	(+)
243160.BMAA1531	(+)
243160.BMA0214	(+)				not used
243160.BMA0819	(+)
243160.BMAA1473	(+)
243160.BMAA1478	(+)
243160.BMAA1671	(+)
243160.BMAA1276	(+)
243160.BMA0965	(+)
243160.BMA2435	(+)
243160.BMA2434	(+)
243160.BMAA0737	(+)
243160.BMA1952	(+)
243160.BMA1151	(+)
243160.BMA1159	(+)
243160.BMA1196	(+)
243160.BMA0778	(+)
243160.BMA1574	(+)
243160.BMA0351	(+)
243160.BMA0190	(+)
243160.BMAA0040	(+)
243160.BMA2124	(+)
243160.BMA0223	(+)
243160.BMA1448	(+)
243160.BMAA0463	(+)
243160.BMAA1025	(+)
243160.BMAA1731	(+)
243160.BMA0428	(+)
243160.BMA3157	(+)
243160.BMA0165	(+)
243160.BMA0764	(+)
243160.BMA2336	(+)
243160.BMA1583	(+)
243160.BMA3086	(+)
243160.BMA3339	(+)				not used
243160.BMAA1661	(+)
243160.BMAA1395	(+)
243160.BMAA0702	(+)
243160.BMAA1256	(+)
243160.BMA0623	(+)
243160.BMAA1038	(+)
243160.BMAA1037	(+)
243160.BMAA0924	(+)
243160.BMA0438	(+)
243160.BMAA1689	(+)
243160.BMA2322	(+)
243160.BMAA0122	(+)
243160.BMA1313	(+)
243160.BMA3188	(+)
243160.BMA0618	(+)
243160.BMAA0063	(+)
243160.BMAA0482	(+)
243160.BMAA0398	(+)
243160.BMA1586	(+)
243160.BMAA0331	(+)
243160.BMA1614	(+)
243160.BMAA1385	(+)
243160.BMAA0900.1	(+)
243160.BMA0537	(+)
243160.BMA3194	(+)
243160.BMA0818	(+)
243160.BMA1787	(+)
243160.BMA0255	(+)				not used
243160.BMAA0303	(+)
243160.BMA2000	(+)
243160.BMA0718	(+)
243160.BMA2716	(+)
243160.BMA2471	(+)
243160.BMAA1298	(+)
243160.BMA2906	(+)
243160.BMA2679	(+)
243160.BMAA0641	(+)
243160.BMAA1744	(+)
243160.BMA0415	(+)
243160.BMA0733	(+)
243160.BMA2883	(+)
243160.BMAA1991	(+)
243160.BMA2271	(+)
243160.BMAA0002	(+)
243160.BMA1333	(+)
243160.BMAA1511	(+)
243160.BMAA1517	(+)
243160.BMA2646	(+)
243160.BMAA0448	(+)
243160.BMA3287	(+)
243160.BMAA0933	(+)
243160.BMA2395	(+)
243160.BMA3262	(+)
243160.BMAA1380	(+)
243160.BMA1346	(+)
243160.BMAA1342	(+)
243160.BMAA0744	(+)
243160.BMA3312	(+)
243160.BMA1252	(+)
243160.BMAA0403	(+)
243160.BMA2925	(+)
243160.BMA3384	(+)
243160.BMAA0408	(+)
243160.BMA2531	(+)
243160.BMA2387	(+)
243160.BMAA1974	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.9 (19/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.375 (19/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================