Metamenu

Effective results for Geobacter sulfurreducens PCA (eggnog40)

Summary

Number of putative secreted proteins: 76
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 76 proteins (2 high, 74 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
243231.GSU2171(PF13276)(mitochondrial); (plastid)
243231.GSU0556(PF13276)(mitochondrial); (plastid)
243231.GSU1941(PF13492)ER
243231.GSU0729(PF13187)ER
243231.GSU0613(PF05140)(ER)
243231.GSU3083(PF13276)(mitochondrial); (plastid)
243231.GSU1924(PF01833)ER
243231.GSU1858(PF01833)ER
243231.GSU1930(PF00025)(mitochondrial)
243231.GSU0248(PF02310)ER; mitochondrial
243231.GSU1844(PF01833)ER
243231.GSU1848(PF13276)(mitochondrial); (plastid)
243231.GSU2128(PF13276)(mitochondrial); (plastid)
243231.GSU2483(PF13492)(mitochondrial)
243231.GSU2795(PF13187)ER
243231.GSU2321PF07343ER
243231.GSU2076(PF01833)ER
243231.GSU0782(PF01058)(mitochondrial)
243231.GSU0238(PF02310)(ER)
243231.GSU1334(PF01833)ER
243231.GSU0204(PF02310)(ER)
243231.GSU2279(PF13276)(mitochondrial); (plastid)
243231.GSU1356(PF13276)(mitochondrial); (plastid)
243231.GSU0761(PF13276)(mitochondrial); (plastid)
243231.GSU2140(PF13276)(mitochondrial); (plastid)
243231.GSU0704(PF05140)ER
243231.GSU2891(PF05140)(ER); ER
243231.GSU2391(PF13276)(mitochondrial); (plastid)
243231.GSU0871(PF02310)(ER)
243231.GSU0092(PF13187)(mitochondrial)
243231.GSU2888(PF02310)(mitochondrial)
243231.GSU1150(PF02310)
243231.GSU0048(PF13276)
243231.GSU2387(PF02310)
243231.GSU2612(PF02915)
243231.GSU0548(PF02310)
243231.GSU3415(PF02310)
243231.GSU0611(PF00731)
243231.GSU1133PF08961not used
243231.GSU1007(PF13492)
243231.GSU1548(PF02915)
243231.GSU2967(PF02915)
243231.GSU1441(PF13187)
243231.GSU0241(PF02310)
243231.GSU0247(PF02310)
243231.GSU2827(PF02915)
243231.GSU0528(PF13187)
243231.GSU0478(PF02915)
243231.GSU0099(PF00025)
243231.GSU0273(PF02310)
243231.GSU1467(PF13187)
243231.GSU2477(PF02310)
243231.GSU2921(PF02310)
243231.GSU2814(PF02915)
243231.GSU0123(PF01058)
243231.GSU0339(PF01058)
243231.GSU2306(PF00731)
243231.GSU0745(PF01058)
243231.GSU2193(PF02915)
243231.GSU2420(PF13187)
243231.GSU1642(PF02915)
243231.GSU2213(PF13492)
243231.GSU2720(PF13187)
243231.GSU0586(PF16199)
243231.GSU0010(PF13492)
243231.GSU3293(PF02915)
243231.GSU2227(PF16199)
243231.GSU2719(PF01058)
243231.GSU1578(PF02310)
243231.GSU3289(PF02915)
243231.GSU3444(PF01058)
243231.GSU2708(PF13187)not used
243231.GSU2418(PF01058)
243231.GSU0367(PF16199)
243231.GSU0384(PF02915)
243231.GSU0140(PF00731)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================