Metamenu

Effective results for marine gamma proteobacterium HTCC2143 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 72 proteins (2 high, 70 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
247633.GP2143_03213PF10170ER
247633.GP2143_17481(PF13347)mitochondrial
247633.GP2143_15696(PF01323)ER
247633.GP2143_10017(PF13347)(ER)
247633.GP2143_01710(PF13347)ER
247633.GP2143_08009(PF13429)ER
247633.GP2143_07809(PF12038)(mitochondrial)
247633.GP2143_17996(PF13468)(ER)
247633.GP2143_11292(PF13429)ER
247633.GP2143_05210(PF03171) (PF14226)
247633.GP2143_11277(PF13347)(mitochondrial)
247633.GP2143_03533(PF03171) (PF14226)
247633.GP2143_01110(PF13429)(mitochondrial)
247633.GP2143_08995(PF03171) (PF14226)
247633.GP2143_14901(PF03171) (PF14226)
247633.GP2143_06933(PF03171) (PF14226)
247633.GP2143_01700(PF03171) (PF14226)
247633.GP2143_05545(PF06777)
247633.GP2143_17761(PF01323)
247633.GP2143_09420(PF17171)
247633.GP2143_05155(PF07045)
247633.GP2143_17551(PF16884)
247633.GP2143_12396(PF13468)
247633.GP2143_06834(PF17048)
247633.GP2143_06948(PF07045)
247633.GP2143_11252(PF05721)
247633.GP2143_02819(PF07045)
247633.GP2143_14541(PF16884)
247633.GP2143_06000(PF13347)
247633.GP2143_15561(PF05721)
247633.GP2143_15151(PF07045)
247633.GP2143_11659(PF16884)
247633.GP2143_05265(PF01323)
247633.GP2143_05260(PF01323)
247633.GP2143_15186(PF07045)
247633.GP2143_14361(PF01323)
247633.GP2143_17721(PF05721)
247633.GP2143_18106(PF05721)
247633.GP2143_05670(PF05721)
247633.GP2143_13236(PF16884)
247633.GP2143_02724(PF01323)
247633.GP2143_14286(PF10504)
247633.GP2143_11699(PF07045)
247633.GP2143_07439(PF11815)
247633.GP2143_01820(PF16884)
247633.GP2143_02984(PF05721)
247633.GP2143_12981(PF16884)
247633.GP2143_09385(PF01323)
247633.GP2143_02454(PF05721)
247633.GP2143_09630(PF13468)
247633.GP2143_18051(PF11017)
247633.GP2143_18056(PF16884)
247633.GP2143_10007(PF05721)
247633.GP2143_06913(PF05721)
247633.GP2143_04550(PF01323)
247633.GP2143_13966(PF07045)
247633.GP2143_02939(PF07045)
247633.GP2143_10012(PF13347)
247633.GP2143_03973(PF13347)
247633.GP2143_18031(PF13468)
247633.GP2143_10787(PF01323)
247633.GP2143_10777(PF17171)
247633.GP2143_09075(PF16884)
247633.GP2143_05295(PF11017)
247633.GP2143_17486(PF13347)
247633.GP2143_05970(PF13347)
247633.GP2143_05975(PF00332)
247633.GP2143_01885(PF16884)
247633.GP2143_05980(PF00332)
247633.GP2143_10757(PF07045)
247633.GP2143_18181(PF16884)
247633.GP2143_02514PF02259

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================