Metamenu

Effective results for Oceanicola batsensis HTCC2597 (eggnog40)

Summary

Number of putative secreted proteins: 106
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 106 proteins (3 high, 103 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
252305.OB2597_17697(PF01527)mitochondrial
252305.OB2597_08374(PF03480)ER; (ER)
252305.OB2597_11841(PF13704)(mitochondrial)
252305.OB2597_00785(PF13127)ER
252305.OB2597_05240(PF02630)(ER)
252305.OB2597_18956(PF03480)ER; (ER)
252305.OB2597_04910(PF02683)ER
252305.OB2597_17592(PF03480)ER
252305.OB2597_01987(PF03480)(mitochondrial)
252305.OB2597_16517(PF02600)ER
252305.OB2597_04920(PF02683)ER
252305.OB2597_16617(PF02630)ER
252305.OB2597_16437(PF02683)ER
252305.OB2597_04820(PF01527)mitochondrial
252305.OB2597_03913(PF02600)ER
252305.OB2597_20081(PF03480)ER
252305.OB2597_19821(PF03480)ER
252305.OB2597_20956(PF03480)ER
252305.OB2597_01532(PF03480)(mitochondrial)
252305.OB2597_05235(PF02600)ER
252305.OB2597_16632(PF02600)ER
252305.OB2597_16637(PF02630)ER
252305.OB2597_16562(PF02683)ER
252305.OB2597_13918(PF03480)mitochondrial
252305.OB2597_05220(PF02630)ER
252305.OB2597_12678(PF02630)ER
252305.OB2597_14204(PF02683)ER
252305.OB2597_02777(PF03480)(mitochondrial)
252305.OB2597_20861(PF03480)ER
252305.OB2597_01070(PF03480)ER; (ER)
252305.OB2597_10219(PF03480)mitochondrial; (mitochondrial)
252305.OB2597_18906(PF03480)ER
252305.OB2597_11796PF10712(mitochondrial)
252305.OB2597_19951(PF03480)ER; (ER)
252305.OB2597_19421(PF03480)ER
252305.OB2597_02567(PF02683)ER
252305.OB2597_13968(PF03480)mitochondrial
252305.OB2597_12778(PF13683) (PF13276)
252305.OB2597_20521(PF09370)(plastid)
252305.OB2597_06035(PF03480)(ER)
252305.OB2597_11846(PF02485)(plastid)
252305.OB2597_17997(PF13683) (PF13276)
252305.OB2597_04935(PF02630)(ER)
252305.OB2597_18332(PF13683) (PF13276)
252305.OB2597_05180(PF01885)(mitochondrial)
252305.OB2597_17097(PF13683) (PF13276)
252305.OB2597_09999(PF01812)(mitochondrial)
252305.OB2597_01207(PF04862)plastid
252305.OB2597_05530(PF03480)(mitochondrial)
252305.OB2597_16897(PF13871) (PF13872)
252305.OB2597_16962(PF13936)(mitochondrial)
252305.OB2597_00385(PF13704)(ER)
252305.OB2597_18726(PF13871) (PF13872)
252305.OB2597_18132(PF13871) (PF13872)
252305.OB2597_14451(PF02485)(plastid)
252305.OB2597_17962(PF13683) (PF13276)
252305.OB2597_14596(PF13683) (PF13276)
252305.OB2597_05010(PF13683) (PF13276)
252305.OB2597_20681(PF13683) (PF13276)
252305.OB2597_18162(PF13683) (PF13276)
252305.OB2597_08994(PF03480)(mitochondrial)
252305.OB2597_00535(PF13704)(ER)
252305.OB2597_05135(PF01885)
252305.OB2597_09154(PF09458)
252305.OB2597_00545(PF13704)
252305.OB2597_00540(PF02475)
252305.OB2597_12748(PF01885)
252305.OB2597_05095(PF13936)
252305.OB2597_20731(PF13683)
252305.OB2597_20516(PF09370)
252305.OB2597_15080PF11781
252305.OB2597_05275(PF11160)
252305.OB2597_18327(PF01527)
252305.OB2597_18501(PF13276)
252305.OB2597_18506(PF01527)
252305.OB2597_15485(PF11160)
252305.OB2597_17092(PF01527)
252305.OB2597_05320(PF01812)
252305.OB2597_14601(PF01527)
252305.OB2597_17957(PF01527)
252305.OB2597_08639(PF00094)
252305.OB2597_20556(PF09370)
252305.OB2597_17082(PF01527)
252305.OB2597_00065(PF11160)
252305.OB2597_05945(PF13276)
252305.OB2597_18382(PF13936)
252305.OB2597_17947(PF12640)
252305.OB2597_18496(PF13683)
252305.OB2597_05950(PF13683)
252305.OB2597_18002(PF01527)
252305.OB2597_08274(PF01812)
252305.OB2597_16987(PF01527)
252305.OB2597_17102(PF01527)
252305.OB2597_17002(PF03480)
252305.OB2597_20686(PF01527)
252305.OB2597_19991(PF03480)
252305.OB2597_05005(PF01527)
252305.OB2597_18167(PF01527)
252305.OB2597_03297(PF13936)
252305.OB2597_05350(PF03480)
252305.OB2597_20116(PF13936)
252305.OB2597_18596(PF13936)
252305.OB2597_05725PF00354
252305.OB2597_12783(PF01527)
252305.OB2597_05700(PF03480)
252305.OB2597_00555(PF13704)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================