Metamenu

Effective results for Bordetella pertussis Tohama I (eggnog40)

Summary

Number of putative secreted proteins: 640
- Predicted by EffectiveT3: 115 (high confidence), 190 (low confidence)
- Predicted by EffectiveCCBD: 15 within, 6 before, 19 behind expected region 25..70aa
- Predicted by T4SEpre: 43
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 273 proteins (218 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type IV, (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
257313.BP3330+ER
257313.BP3810PF00665(mitochondrial)
257313.BP2224(PF03797)ER; mitochondrial
257313.BP3494(PF03797)(mitochondrial); (ER)
257313.BP3784+ER
257313.BP3785+mitochondrial
257313.BP0323+ER
257313.BP3317+(mitochondrial); plastid
257313.BP3312PF00665(mitochondrial)
257313.BP1110(PF03797)(mitochondrial)
257313.BP2473+(mitochondrial)
257313.BP1922(PF01958)(ER)
257313.BP2480(>)ER
257313.BP1355+mitochondrial; (mitochondrial)
257313.BP2673PF00665(mitochondrial)
257313.BP2076(<)ER
257313.BP0746(+)(>)(mitochondrial); (plastid)
257313.BP2922(>)ER
257313.BP1767(PF03797)(ER)
257313.BP1344(PF03797)ER
257313.BP1168(>)mitochondrial; (mitochondrial)
257313.BP2667(PF13332)(mitochondrial)
257313.BP2282(>)ER
257313.BP1488+mitochondrial
257313.BP3783+ER
257313.BP1568+ER
257313.BP2974+ER
257313.BP2425+mitochondrial
257313.BP1943+ER
257313.BP1054(PF03797)mitochondrial
257313.BP3414(>)(mitochondrial)
257313.BP0827+ER
257313.BP1660(PF03797)ER
257313.BP1285+ER
257313.BP2230(>)mitochondrial
257313.BP2769+mitochondrial
257313.BP3583(>)(mitochondrial)
257313.BP1077+ER
257313.BP3003+ER
257313.BP3137+ER
257313.BP0596+(mitochondrial); mitochondrial
257313.BP0905+(ER)
257313.BP0903+(ER)
257313.BP0302+ER
257313.BP0699+ER
257313.BP2125A+ER
257313.BP2755(PF07678)ER
257313.BP0681+(ER)
257313.BP0864(+)mitochondrial; plastid
257313.BP2324+(plastid)
257313.BP1201(PF03797)(ER)
257313.BP2808+(ER)
257313.BP1428+(plastid)
257313.BP2907+(PF13332)
257313.BP3057PF08017(mitochondrial)
257313.BP2467(+)(mitochondrial)
257313.BP1178(+)ER
257313.BP2583(+)mitochondrial; (mitochondrial)
257313.BP3724+(ER)
257313.BP1901(+)(mitochondrial)
257313.BP2663+plastid
257313.BP3228(+)(mitochondrial)
257313.BP0996+plastid
257313.BP3142+plastid
257313.BP2252(+)(mitochondrial); (plastid)
257313.BP1495+(ER)
257313.BP2553+(mitochondrial)
257313.BP3177PF07476 PF05034
257313.BP1550+(mitochondrial)
257313.BP0398+(ER)
257313.BP0806PF07476 PF05034
257313.BP1601+(plastid)
257313.BP0529+(PF03797)
257313.BP1301(<)+
257313.BP2383(>)(mitochondrial)
257313.BP2622(+)mitochondrial
257313.BP2158+(plastid)
257313.BP3287(<)+
257313.BP0951(>)(mitochondrial)
257313.BP1443(>)(ER)
257313.BP0030+(PF03972)
257313.BP3004+(plastid)
257313.BP3836+(plastid)
257313.BP2051(+)(mitochondrial); (plastid)
257313.BP1400(+)(mitochondrial); (plastid)
257313.BP3806PF00665
257313.BP2535+
257313.BP3243(PF02371)
257313.BP3249+
257313.BP0910PF00665
257313.BP0918(PF03972)
257313.BP2227+
257313.BP2221PF00665
257313.BP0490+
257313.BP3336PF00665
257313.BP0688PF00665
257313.BP3062+
257313.BP3065PF00665
257313.BP2824(PF04412)
257313.BP2823(PF01989)
257313.BP2821PF00665
257313.BP3468+
257313.BP3046PF00665
257313.BP0867PF00665
257313.BP0049PF00665
257313.BP0041PF00665
257313.BP1332PF00665
257313.BP0268PF00665
257313.BP1799(+)(>)
257313.BP1792PF00665
257313.BP0537PF00665
257313.BP1224PF00665
257313.BP1134PF00665
257313.BP1130PF00665
257313.BP3613+
257313.BP3811PF00665
257313.BP1547(<)
257313.BP2788(+)(mitochondrial)
257313.BP2781PF00665
257313.BP3257PF00665
257313.BP2250+
257313.BP3323PF00665
257313.BP0676PF00665
257313.BP0672+
257313.BP2819PF00665
257313.BP2812PF00665
257313.BP3677+
257313.BP0783(PF13468)
257313.BP3478PF00665
257313.BP0786PF00665
257313.BP0897PF00665
257313.BP0891PF00665
257313.BP0899+
257313.BP0074+
257313.BP0071PF00665
257313.BP3786+
257313.BP0256PF00665
257313.BP1308PF00665
257313.BP0099(+)(plastid)
257313.BP1418(>)
257313.BP1230(+)(plastid)
257313.BP0327PF00665
257313.BP2029PF00665
257313.BP3263+
257313.BP3266+
257313.BP3313PF00665
257313.BP3311PF00665
257313.BP2806+
257313.BP3687(+)(ER)
257313.BP0408PF00665
257313.BP0797PF00665
257313.BP3441(+)+
257313.BP0882(PF03972)
257313.BP0888(+)+
257313.BP1337PF00665
257313.BP0080PF00665
257313.BP1758(+)(plastid)
257313.BP1757PF00665
257313.BP0338+
257313.BP1689PF00665
257313.BP1118PF00665
257313.BP1116+
257313.BP2493+
257313.BP2492PF00665
257313.BP2301+
257313.BP2018PF00665
257313.BP2272PF00665
257313.BP2477PF00665
257313.BP0814+
257313.BP3279PF00665
257313.BP0812(PF02371)
257313.BP3272PF00665
257313.BP3692+
257313.BP3698PF00665
257313.BP3055PF00665
257313.BP0500+
257313.BP1748PF00665
257313.BP1697PF00665
257313.BP3438+
257313.BP2481+
257313.BP2485PF00665
257313.BP2315(PF03797)
257313.BP2316PF00665
257313.BP3846+
257313.BP3842(PF03972)
257313.BP2266PF00665
257313.BP3510PF00665
257313.BP3519PF00665
257313.BP2863(PF13468)
257313.BP2861PF00665
257313.BP2867+
257313.BP0297PF00665
257313.BP2869(PF10994)
257313.BP0295PF00665
257313.BP3203PF00665
257313.BP0443PF00665
257313.BP3421+
257313.BP3423PF00665
257313.BP2912PF00665
257313.BP0645PF00665
257313.BP0646PF00665
257313.BP0647(PF01989)
257313.BP0514PF00665
257313.BP0517PF00665
257313.BP1594PF00665
257313.BP3731+
257313.BP0429+
257313.BP1911PF00665
257313.BP1914(PF02371)
257313.BP0424PF00665
257313.BP3049PF00665
257313.BP0353+
257313.BP0355PF00665
257313.BP1177PF00665
257313.BP0023PF00665
257313.BP2672PF00665
257313.BP2679PF00665
257313.BP3851PF00665
257313.BP3852+
257313.BP2582PF00665
257313.BP2587PF00665
257313.BP2297PF00665
257313.BP2105PF00665
257313.BP2104PF00665
257313.BP2458+
257313.BP2453PF00665
257313.BP3505PF00665
257313.BP3503+
257313.BP2852PF00665
257313.BP3186PF00665
257313.BP3185PF00665
257313.BP3210PF00665
257313.BP3216(PF02371)
257313.BP3436PF00665
257313.BP1589(PF03972)
257313.BP0565PF00665
257313.BP0567(PF01958)
257313.BP0566(PF13468)
257313.BP3726PF00665
257313.BP3723+
257313.BP0365PF00665
257313.BP0166PF00665
257313.BP0161+
257313.BP1348+
257313.BP1349+
257313.BP2732+
257313.BP2666PF00665
257313.BP3451PF00665
257313.BP2286(>)
257313.BP2848PF00665
257313.BP3532+
257313.BP2845PF00665
257313.BP3220PF00665
257313.BP3408PF00665
257313.BP3406PF00665
257313.BP3157+
257313.BP2931+
257313.BP0997PF00665
257313.BP1572PF00665
257313.BP0579+
257313.BP1971+
257313.BP1977(>)
257313.BP0192PF00665
257313.BP1711PF00665
257313.BP1717(PF02371)
257313.BP0175PF00665
257313.BP1807PF00665
257313.BP1809PF00665
257313.BP0281PF00665
257313.BP1157PF00665
257313.BP1397PF00665
257313.BP1020PF00665
257313.BP2613(PF04412)
257313.BP2612(PF01989)
257313.BP0825+
257313.BP0439PF00665
257313.BP1439PF00665
257313.BP2724PF00665
257313.BP2054PF00665
257313.BP2721(PF02371)
257313.BP2729+
257313.BP2728(>)
257313.BP2121(PF02371)
257313.BP3230(PF02371)
257313.BP2947PF00665
257313.BP3091PF00665
257313.BP0611PF00665
257313.BP3520PF00665
257313.BP1566+
257313.BP1565+
257313.BP1493PF00665
257313.BP1491PF00665
257313.BP0144(+)(mitochondrial)
257313.BP1361PF00665
257313.BP1365(PF02371)
257313.BP1810PF00665
257313.BP0547+
257313.BP0546(+)+
257313.BP0813+
257313.BP0540PF00665
257313.BP1142PF00665
257313.BP1633PF00665
257313.BP1388(PF02371)
257313.BP1034+
257313.BP1035(PF02371)
257313.BP0604+
257313.BP2608PF00665
257313.BP2044+
257313.BP2733PF00665
257313.BP2048PF00665
257313.BP2738(PF03797)
257313.BP2135PF00665
257313.BP2137PF00665
257313.BP2423+
257313.BP3392PF00665
257313.BP3476+
257313.BP3179(PF03972)
257313.BP2955PF00665
257313.BP1553+
257313.BP1552PF00665
257313.BP1557PF00665
257313.BP1955+
257313.BP1959(PF02371)
257313.BP0779(PF10994)
257313.BP0775(PF03797)
257313.BP0397+
257313.BP0392PF00665
257313.BP0152+
257313.BP3607PF00665
257313.BP3603(PF02371)
257313.BP2433(>)
257313.BP0808(PF03972)
257313.BP1602PF00665
257313.BP3838+
257313.BP1300+
257313.BP0844(>)
257313.BP1735PF00665
257313.BP1733+
257313.BP1044(PF02371)
257313.BP1048PF00665
257313.BP0381+
257313.BP2637(+)(ER)
257313.BP2630PF00665
257313.BP2702+
257313.BP2704PF00665
257313.BP2144+
257313.BP2386+
257313.BP3386PF00665
257313.BP0550+
257313.BP2568PF00665
257313.BP3164PF00665
257313.BP0942+
257313.BP3548PF00665
257313.BP1947PF00665
257313.BP1949+
257313.BP0496PF00665
257313.BP0709+
257313.BP0704PF00665
257313.BP0124PF00665
257313.BP0839PF00665
257313.BP1544PF00665
257313.BP0830PF00665
257313.BP1727+
257313.BP1053(PF02371)
257313.BP2087PF00665
257313.BP2409(+)+
257313.BP2390PF00665
257313.BP2797+
257313.BP2577PF00665
257313.BP2579PF00665
257313.BP3111PF00665
257313.BP3110+
257313.BP3114PF00665
257313.BP2976PF00665
257313.BP3282+
257313.BP0958+
257313.BP0957PF00665
257313.BP2884PF00665
257313.BP0005(<)
257313.BP3593PF00665
257313.BP0481PF00665
257313.BP0137PF00665
257313.BP1844PF00665
257313.BP1199PF00665
257313.BP0228PF00665
257313.BP1287PF00665
257313.BP1286+
257313.BP1067PF00665
257313.BP1268PF00665
257313.BP1260(+)(mitochondrial)
257313.BP2763PF00665
257313.BP3107+
257313.BP2166PF00665
257313.BP2165+
257313.BP2184+
257313.BP2181PF00665
257313.BP2502+
257313.BP2985+
257313.BP3103PF00665
257313.BP2983+
257313.BP3294PF00665
257313.BP3295+
257313.BP1375+
257313.BP0926+
257313.BP3560+
257313.BP1374(+)(plastid)
257313.BP2214PF00665
257313.BP0031PF00665
257313.BP3035+
257313.BP3581+
257313.BP0724(+)(mitochondrial)
257313.BP1378(+)(mitochondrial)
257313.BP0729PF00665
257313.BP1450PF00665
257313.BP1459PF00665
257313.BP1859+
257313.BP1678PF00665
257313.BP0211PF00665
257313.BP0210PF00665
257313.BP0216(+)(PF03797)
257313.BP0215(+)(mitochondrial)
257313.BP1256+
257313.BP1297(+)+
257313.BP3748+
257313.BP1070+
257313.BP1278PF00665
257313.BP3528+
257313.BP3743+
257313.BP2776PF00665
257313.BP0289+
257313.BP2173+
257313.BP2178(+)+
257313.BP2371(PF03972)
257313.BP2194+
257313.BP2191+
257313.BP3820+
257313.BP3829+
257313.BP2512(PF03972)
257313.BP0938PF00665
257313.BP0106+
257313.BP2140+
257313.BP2207PF00665
257313.BP2415PF00665
257313.BP3005PF00665
257313.BP2549+
257313.BP0733PF00665
257313.BP0739PF00665
257313.BP0118(PF02371)
257313.BP0110PF00665
257313.BP1866PF00665
257313.BP1860(>)
257313.BP1511PF00665
257313.BP0202PF00665
257313.BP0203PF00665
257313.BP2896+
257313.BP1086PF00665
257313.BP1080PF00665
257313.BP1244+
257313.BP1647PF00665
257313.BP2748PF00665
257313.BP2524PF00665
257313.BP3839PF00665
257313.BP0900(<)
257313.BP3013(PF13468)
257313.BP2832+
257313.BP0473PF00665
257313.BP3652+
257313.BP3656+
257313.BP1879(PF13332)
257313.BP0871PF00665
257313.BP0058PF00665
257313.BP1894+
257313.BP0804+
257313.BP1093PF00665
257313.BP1079+
257313.BP1653PF00665
257313.BP1656PF00665
257313.BP3075+
257313.BP2756+
257313.BP2757+
257313.BP2355PF00665
257313.BP3484(+)
257313.BP3482(+)
257313.BP0465(+)
257313.BP0467(+)
257313.BP3466(+)
257313.BP3460(+)
257313.BP0862(+)
257313.BP0044(+)
257313.BP0264(+)
257313.BP1405(+)
257313.BP2436(+)
257313.BP0315(+)
257313.BP1137(+)
257313.BP2340(+)
257313.BP3250(+)
257313.BP0670(+)
257313.BP0673(+)
257313.BP2811(+)
257313.BP3672(+)
257313.BP0680(+)
257313.BP0092(+)
257313.BP0684A(+)
257313.BP1234(+)
257313.BP1121(+)
257313.BP2338(+)
257313.BP2332(+)
257313.BP0662(+)
257313.BP2807(+)
257313.BP3684(+)
257313.BP3445(+)
257313.BP1935(+)
257313.BP1497(+)
257313.BP2735(+)
257313.BP3303(+)
257313.BP0657(+)
257313.BP1630(+)
257313.BP1431(+)
257313.BP1213(+)
257313.BP1214(+)
257313.BP2488(+)
257313.BP0309(+)
257313.BP2264(+)
257313.BP2910(+)
257313.BP3733(+)
257313.BP0356(+)
257313.BP1176(+)
257313.BP3856(+)
257313.BP3859(+)
257313.BP2071(+)
257313.BP0656(+)
257313.BP2459(+)
257313.BP2102(+)
257313.BP2452(+)
257313.BP3211(+)
257313.BP3217(+)
257313.BP2920(+)
257313.BP0636(+)
257313.BP3721(+)
257313.BP1906(+)
257313.BP1764(+)
257313.BP3579(+)
257313.BP1015(+)
257313.BP3535(+)
257313.BP3226(+)
257313.BP3153(+)
257313.BP2930(+)
257313.BP0584(+)
257313.BP3087(+)
257313.BP3085(+)
257313.BP3713(+)
257313.BP1972(+)
257313.BP0371(+)
257313.BP1486(+)
257313.BP0174(+)
257313.BP0285(+)
257313.BP1435(+)
257313.BP2725(+)
257313.BP2722(+)
257313.BP0431(+)
257313.BP2253(+)
257313.BP3235(+)
257313.BP2540(+)
257313.BP2542(+)
257313.BP3149(+)
257313.BP2949(+)
257313.BP3097(+)
257313.BP3526(+)
257313.BP3705(+)
257313.BP1701(+)
257313.BP1706(+)
257313.BP1144(+)
257313.BP1382(+)
257313.BP1625(+)
257313.BP2603(+)
257313.BP2041(+)
257313.BP3395(+)
257313.BP3390(+)
257313.BP2957(+)
257313.BP3779(+)
257313.BP0391(+)
257313.BP1609(+)
257313.BP2417(+)
257313.BP2146(+)
257313.BP2966(+)
257313.BP2965(+)
257313.BP2964(+)
257313.BP3546(+)
257313.BP2647(+)
257313.BP3344(+)
257313.BP3764(+)
257313.BP1946(+)
257313.BP0491(+)
257313.BP1836(+)
257313.BP3401(+)
257313.BP1728(+)
257313.BP2621(+)
257313.BP1462(+)
257313.BP2718(+)
257313.BP2711(+)
257313.BP1465(+)
257313.BP2571(+)
257313.BP2888(+)
257313.BP3599(+)
257313.BP3598(+)
257313.BP0133(+)
257313.BP3622(+)
257313.BP1538(+)
257313.BP0226(+)
257313.BP2363(+)
257313.BP2368(+)
257313.BP2187(+)
257313.BP3369(+)
257313.BP3298(+)
257313.BP2215(+)
257313.BP3740(+)
257313.BP3588(+)
257313.BP3630(+)
257313.BP1857(+)
257313.BP1295(+)
257313.BP3037(+)
257313.BP2773(+)
257313.BP1143(+)
257313.BP2376(+)
257313.BP2193(+)
257313.BP0932(+)
257313.BP3135(+)
257313.BP0518(+)
257313.BP1516(+)
257313.BP2233(+)
257313.BP2234(+)
257313.BP0479(+)
257313.BP3651(+)
257313.BP1520(+)
257313.BP1874(+)
257313.BP1876(+)
257313.BP0056(+)
257313.BP1406(+)
257313.BP2751(+)
257313.BP2350(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================