Metamenu

Effective results for Mycobacterium avium subsp. paratuberculosis K-10 (eggnog40)

Summary

Number of putative secreted proteins: 256
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 256 proteins (49 high, 207 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
262316.MAP2115c(PF02470)ER
262316.MAP2033(PF00067)mitochondrial
262316.MAP1850(PF02405)(ER); plastid
262316.MAP1856(PF02470)mitochondrial
262316.MAP1854(PF02470)ER
262316.MAP4083(PF02405)mitochondrial
262316.MAP4087(PF02470)mitochondrial
262316.MAP4085(PF02470)ER
262316.MAP4088(PF02470)ER
262316.MAP4089(PF02470)ER
262316.MAP0868c(PF13772)mitochondrial
262316.MAP4272c(PF00080)ER
262316.MAP0210c(PF01744)ER
262316.MAP2862PF04072(ER)
262316.MAP2117c(PF02405)(ER)
262316.MAP2131c(PF00080)ER
262316.MAP4320(PF03176)ER; (ER)
262316.MAP1852(PF02470)ER
262316.MAP1373c(PF00067)mitochondrial
262316.MAP1855(PF02470)ER
262316.MAP2111c(PF02470)ER
262316.MAP3637c(PF03176)ER
262316.MAP1680c(PF01083)ER
262316.MAP2112c(PF02470)ER
262316.MAP2192(PF02470)ER
262316.MAP2190(PF02470)ER
262316.MAP2191(PF02470)mitochondrial
262316.MAP2194(PF02470)ER
262316.MAP0758(PF02405)mitochondrial
262316.MAP0111(PF02470)ER
262316.MAP2113c(PF02470)(ER)
262316.MAP2189(PF02470)(mitochondrial)
262316.MAP2232(PF03176)ER
262316.MAP0109(PF02470)ER
262316.MAP0108(PF02470)ER
262316.MAP0107(PF02405)ER
262316.MAP2324c(PF03176)mitochondrial
262316.MAP0569(PF02470)ER
262316.MAP0568(PF02470)mitochondrial; (mitochondrial)
262316.MAP0565(PF02470)(ER)
262316.MAP0564(PF02470)ER
262316.MAP0567(PF02470)mitochondrial
262316.MAP3605(PF02470)ER
262316.MAP3607(PF02470)(mitochondrial)
262316.MAP3606(PF02470)(ER)
262316.MAP3609(PF02470)ER
262316.MAP3608(PF02470)mitochondrial
262316.MAP3921(PF00080)ER
262316.MAP4254PF14494ER
262316.MAP4237c(PF01083)(ER)
262316.MAP0765(PF02470)ER
262316.MAP0762(PF02470)ER
262316.MAP0761(PF02470)ER
262316.MAP0760(PF02470)ER
262316.MAP4236c(PF01083)ER
262316.MAP3641c(PF03176)(mitochondrial)
262316.MAP3890(PF03176)(ER); ER
262316.MAP2233(PF03176)ER
262316.MAP3080(PF03176)(ER)
262316.MAP1662c(PF01083)ER
262316.MAP1239c(PF03176)(mitochondrial)
262316.MAP0218(PF01083)ER
262316.MAP1476c(PF01083)(ER)
262316.MAP2114c(PF02470)(ER); (mitochondrial)
262316.MAP4086(PF02470)(mitochondrial)
262316.MAP4084(PF02470)(ER)
262316.MAP4175PF14494(mitochondrial)
262316.MAP2642(PF00195) (PF02797)
262316.MAP3783(PF06013)(plastid)
262316.MAP3347c(PF06974) (PF03007)
262316.MAP3657(PF03007) (PF06974)
262316.MAP2010(PF03492)(mitochondrial)
262316.MAP0131c(PF06974) (PF03007)
262316.MAP0904(PF08310)(plastid)
262316.MAP0757(PF02405)(mitochondrial)
262316.MAP0112(PF02470)(ER)
262316.MAP0113(PF02470)(mitochondrial)
262316.MAP0347c(PF03007) (PF06974)
262316.MAP3603(PF02405)(plastid)
262316.MAP3604(PF02470)(ER)
262316.MAP3131(PF03176)(ER)
262316.MAP0774c(PF00067)(plastid)
262316.MAP2300c(PF06974) (PF03007)
262316.MAP1369(PF00195) (PF02797)
262316.MAP3428c(PF01083)(mitochondrial)
262316.MAP1453c(PF06974) (PF03007)
262316.MAP1372(PF00195) (PF02797)
262316.MAP1969c(PF06974) (PF03007)
262316.MAP2261c(PF00067)(plastid)
262316.MAP1827c(PF08148)(mitochondrial)
262316.MAP1156(PF03007) (PF06974)
262316.MAP0159cPF02371
262316.MAP2108PF02371
262316.MAP4064cPF04072
262316.MAP2030(PF00067)
262316.MAP3748cPF02371
262316.MAP2204c(PF03405)
262316.MAP1853(PF02470)
262316.MAP1851(PF02470)
262316.MAP4082(PF02405)
262316.MAP0093(PF02405)
262316.MAP0092(PF02405)
262316.MAP4173PF14494
262316.MAP1771cPF02371
262316.MAP2183c(PF00067)
262316.MAP1782c(PF00067)
262316.MAP2076cPF04072
262316.MAP2340c(PF13452)
262316.MAP2116c(PF02470)
262316.MAP0344c(PF00067)
262316.MAP2525c(PF00067)
262316.MAP1849(PF02405)
262316.MAP1660PF04072
262316.MAP2635c(PF03176)
262316.MAP4306(PF13469)
262316.MAP0333(PF01083)
262316.MAP3784(PF06013)
262316.MAP3964c(PF02353)
262316.MAP2015(PF00067)
262316.MAP2304(PF01083)
262316.MAP1785PF02371
262316.MAP0256PF04072
262316.MAP0321(PF02353)
262316.MAP0600c(PF00067)
262316.MAP3495c(PF01083)
262316.MAP3479c(PF13452)
262316.MAP2444cPF02371
262316.MAP1460(PF13452)
262316.MAP2332c(PF08354)
262316.MAP1311PF02551
262316.MAP2518(PF00067)
262316.MAP3327c(PF13469)
262316.MAP0076(PF03176)
262316.MAP0135(PF02353)
262316.MAP4190cPF04072
262316.MAP1603c(PF00067)
262316.MAP0730c(PF00067)
262316.MAP3818(PF00067)
262316.MAP2051c(PF00067)
262316.MAP3109(PF00067)
262316.MAP0832cPF02371
262316.MAP0284c(PF13810)
262316.MAP4191cPF04072
262316.MAP3480PF02371
262316.MAP2034cPF02371
262316.MAP1469c(PF00067)
262316.MAP0759(PF02470)
262316.MAP0110(PF02470)
262316.MAP3477(PF03007)
262316.MAP0222cPF04072
262316.MAP2050PF02371
262316.MAP0598c(PF00067)
262316.MAP2239(PF03176)
262316.MAP1508(PF06013)
262316.MAP4197cPF04072
262316.MAP1344(PF00067)
262316.MAP1622cPF04072
262316.MAP2371c(PF00067)
262316.MAP4066PF02371
262316.MAP0566(PF02470)
262316.MAP0563(PF02405)
262316.MAP0562(PF02405)
262316.MAP3590(PF00067)
262316.MAP0967PF02371
262316.MAP4244(PF06013)
262316.MAP4243(PF06013)
262316.MAP3286PF02371
262316.MAP3602(PF02405)
262316.MAP3996c(PF13452)
262316.MAP1822c(PF14021)
262316.MAP0058c(PF13469)
262316.MAP4116c(PF02353)
262316.MAP1287PF02371
262316.MAP1503c(PF00067)
262316.MAP4107(PF13452)
262316.MAP4109(PF13452)
262316.MAP1979(PF00067)
262316.MAP4079PF04072
262316.MAP4078PF04072
262316.MAP4095c(PF02353)
262316.MAP0009(PF00067)
262316.MAP1614c(PF00067)
262316.MAP0529c(PF13452)
262316.MAP4117c(PF02353)
262316.MAP3995c(PF02353)
262316.MAP2202c(PF03405)
262316.MAP0764(PF02470)
262316.MAP0161(PF06013)
262316.MAP0160(PF06013)
262316.MAP0547(PF00067)
262316.MAP1793cPF02371
262316.MAP0209c(PF08310)
262316.MAP4189cPF04072
262316.MAP2157PF02371
262316.MAP0882cPF04072
262316.MAP1378(PF13469)
262316.MAP3289c(PF02470)
262316.MAP3881PF04072
262316.MAP2203cPF02371
262316.MAP1717(PF08310)
262316.MAP0537(PF13469)
262316.MAP0027(PF14021)
262316.MAP3947(PF03176)
262316.MAP2698c(PF03405)
262316.MAP0847(PF13810)
262316.MAP3385PF04072
262316.MAP3549(PF13469)
262316.MAP2382(PF00067)
262316.MAP4068c(PF00067)
262316.MAP3049c(PF03176)
262316.MAP0704(PF00067)
262316.MAP2365(PF00067)
262316.MAP0309c(PF13810)
262316.MAP2649c(PF00067)
262316.MAP3814cPF02371
262316.MAP1722PF02371
262316.MAP0034PF02371
262316.MAP0752c(PF00067)
262316.MAP0522(PF00067)
262316.MAP0525(PF13452)
262316.MAP1033PF02371
262316.MAP4281PF02371
262316.MAP3425(PF13772)
262316.MAP3553(PF00067)
262316.MAP0336c(PF00067)
262316.MAP3777PF04072
262316.MAP1738(PF03176)
262316.MAP2666c(PF06974)
262316.MAP0289(PF14863)
262316.MAP0287(PF13469)
262316.MAP3963(PF02353)
262316.MAP3329c(PF14863)
262316.MAP1240c(PF03176)
262316.MAP3563PF04072
262316.MAP3564PF04072
262316.MAP3999c(PF06013)
262316.MAP0727(PF00067)
262316.MAP2584(PF00067)
262316.MAP2586(PF13452)
262316.MAP2344(PF00067)
262316.MAP0612(PF00067)
262316.MAP1230(PF13469)
262316.MAP4000c(PF06013)
262316.MAP1866c(PF00067)
262316.MAP0658c(PF03405)
262316.MAP1828c(PF08148)
262316.MAP3998c(PF14021)
262316.MAP3751(PF03176)
262316.MAP2020(PF01083)
262316.MAP0668(PF00067)
262316.MAP0663PF04072
262316.MAP2837c(PF08310)
262316.MAP0262(PF14863)
262316.MAP1952cPF02371
262316.MAP2577PF02371
262316.MAP3216PF04072

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================