Effective results for Chelativorans sp. BNC1 (eggnog40)

Summary

Number of putative secreted proteins: 124
- Predicted by T4SEpre: 88
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 53 proteins (1 high, 52 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
266779.Meso_3886			+		(ER)
266779.Meso_2047			+		ER
266779.Meso_2918				(PF01970)	(ER)
266779.Meso_3060			+		ER
266779.Meso_2628				(PF00221)	mitochondrial; (mitochondrial)
266779.Meso_0415				(PF01970)	ER
266779.Meso_3996			+		ER
266779.Meso_3199			+		ER
266779.Meso_3049				(PF01970)	ER; (ER)
266779.Meso_4093				(PF07648)	ER
266779.Meso_1962			+		ER
266779.Meso_2509			+		ER
266779.Meso_1151			+		(mitochondrial); mitochondrial
266779.Meso_2588			+		(mitochondrial)
266779.Meso_3231			+		ER
266779.Meso_1415			+		mitochondrial; ER
266779.Meso_3167			+		ER
266779.Meso_2375			+		(mitochondrial); mitochondrial
266779.Meso_2997			+		(mitochondrial)
266779.Meso_3315				(PF01970)	ER; (ER)
266779.Meso_3290				(PF01970)	(ER)
266779.Meso_0699			+		ER
266779.Meso_1514			+		ER
266779.Meso_2511				(PF01970)	ER
266779.Meso_1296			+		ER
266779.Meso_0092			+		ER
266779.Meso_3299				(PF01970)	ER
266779.Meso_2390				(PF00206) (PF14698)	(mitochondrial)
266779.Meso_1285				(PF00206)	(mitochondrial)
266779.Meso_1067				(PF01970)	ER
266779.Meso_2892			+		ER
266779.Meso_2412				(PF00024)	ER
266779.Meso_2003			+		(mitochondrial)
266779.Meso_1033				(PF06455)	ER
266779.Meso_2629				(PF00206) (PF14698)
266779.Meso_0564				(PF00206) (PF14698)
266779.Meso_0965			+		(plastid)
266779.Meso_2927			+		(ER)
266779.Meso_3038				(PF00206) (PF14698)
266779.Meso_2545				(PF01175)	(mitochondrial)
266779.Meso_3828				(PF13872) (PF13871)
266779.Meso_1408			+	(PF01442)
266779.Meso_2366				(PF00206) (PF14698)
266779.Meso_3217			+		(mitochondrial)
266779.Meso_1079				(PF09130)	(plastid)
266779.Meso_2397				(PF01970)	(ER)
266779.Meso_2392				(PF00206) (PF14698)
266779.Meso_0535				(PF13872) (PF13871)
266779.Meso_3901			+		(mitochondrial)
266779.Meso_1734			+		(mitochondrial)
266779.Meso_2293				(PF07978)	(mitochondrial)
266779.Meso_3404			+
266779.Meso_1026			+
266779.Meso_0750			+
266779.Meso_3666			+
266779.Meso_1935			+
266779.Meso_2052				(PF00206)
266779.Meso_0565			+
266779.Meso_0413				(PF07978)
266779.Meso_2630			+
266779.Meso_2632				(PF00221)
266779.Meso_2639				(PF06032)
266779.Meso_2638				(PF01175)
266779.Meso_3999			+
266779.Meso_0963			+
266779.Meso_1228			+
266779.Meso_1353			+
266779.Meso_1773			+
266779.Meso_3684			+
266779.Meso_0228			+
266779.Meso_3857			+
266779.Meso_3326			+
266779.Meso_1784			+
266779.Meso_0238			+
266779.Meso_3842			+
266779.Meso_2953			+
266779.Meso_2959				(PF07978)
266779.Meso_1373			+
266779.Meso_1375				(PF01755)
266779.Meso_3787			+
266779.Meso_3788			+
266779.Meso_1524			+
266779.Meso_2548				(PF06032)
266779.Meso_2540				(PF00221)
266779.Meso_0210			+
266779.Meso_2978				(PF00221)
266779.Meso_3087			+
266779.Meso_2446			+
266779.Meso_3966				(PF01970)
266779.Meso_2983				(PF01175)
266779.Meso_2985				(PF00221)
266779.Meso_0125			+
266779.Meso_2188				(PF13127)
266779.Meso_2743			+
266779.Meso_2745			+
266779.Meso_1198			+
266779.Meso_1049				(PF09130)
266779.Meso_2347			+
266779.Meso_2341			+
266779.Meso_3349			+
266779.Meso_0259				(PF00024)
266779.Meso_1850				(PF06032)
266779.Meso_3816			+
266779.Meso_2086			+
266779.Meso_0622			+
266779.Meso_1586			+
266779.Meso_1849				(PF06032)
266779.Meso_1844				(PF01970)
266779.Meso_3621				(PF00206)
266779.Meso_3622				(PF00206)
266779.Meso_3723				PF03736
266779.Meso_2664			+
266779.Meso_2718			+
266779.Meso_2387				(PF01970)
266779.Meso_0385			+
266779.Meso_2528				(PF07978)
266779.Meso_0529			+
266779.Meso_0833			+
266779.Meso_0858			+
266779.Meso_2068			+
266779.Meso_1730			+
266779.Meso_0355				(PF00206)
266779.Meso_2114				(PF01755)
266779.Meso_2116				(PF01755)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.8 (18/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================