Effective results for Ehrlichia canis str. Jake (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 54
- Predicted by EffectiveELD: 1 eukaryotic-like domains, contained in 1 proteins (0 high, 1 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
269484.Ecaj_0343			+		ER
269484.Ecaj_0151			+		ER
269484.Ecaj_0232			+		mitochondrial
269484.Ecaj_0716			+		ER
269484.Ecaj_0122			+		ER
269484.Ecaj_0404			+		ER
269484.Ecaj_0476				(PF06455)	ER
269484.Ecaj_0021			+		ER
269484.Ecaj_0531			+		ER
269484.Ecaj_0338			+		(mitochondrial)
269484.Ecaj_0925			+		(mitochondrial)
269484.Ecaj_0096			+
269484.Ecaj_0638			+
269484.Ecaj_0342			+
269484.Ecaj_0799			+
269484.Ecaj_0935			+
269484.Ecaj_0016			+
269484.Ecaj_0691			+
269484.Ecaj_0271			+
269484.Ecaj_0941			+
269484.Ecaj_0004			+
269484.Ecaj_0363			+
269484.Ecaj_0434			+
269484.Ecaj_0430			+
269484.Ecaj_0431			+
269484.Ecaj_0221			+
269484.Ecaj_0220			+
269484.Ecaj_0327			+
269484.Ecaj_0047			+
269484.Ecaj_0764			+
269484.Ecaj_0762			+
269484.Ecaj_0266			+
269484.Ecaj_0268			+
269484.Ecaj_0217			+
269484.Ecaj_0071			+
269484.Ecaj_0379			+
269484.Ecaj_0784			+
269484.Ecaj_0429			+
269484.Ecaj_0428			+
269484.Ecaj_0920			+
269484.Ecaj_0930			+
269484.Ecaj_0775			+
269484.Ecaj_0027			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.3 (13/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================