Metamenu

Effective results for Staphylococcus haemolyticus JCSC1435 (eggnog40)

Summary

Number of putative secreted proteins: 101
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 101 proteins (46 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
279808.SH2447PF01610mitochondrial; (mitochondrial)
279808.SH0759PF01610mitochondrial
279808.SH0359PF05257ER
279808.SH1719PF05257ER
279808.SH0256(PF05154)mitochondrial
279808.SH0099(PF03596)(ER)
279808.SH0680(PF11070)ER
279808.SH1923(PF05154)ER
279808.SH2547PF05257(ER)
279808.SH0822(PF00344)(mitochondrial)
279808.SH1701(PF05154)ER
279808.SH2323(PF03596)ER
279808.SH0512PF05257ER
279808.SH1533(PF01609) (PF05598)
279808.SH1080(PF01609) (PF05598)
279808.SH1898(PF01609) (PF05598)
279808.SH1872(PF01609) (PF05598)
279808.SH0382(PF01609) (PF05598)
279808.SH2017(PF01609) (PF05598)
279808.SH2136PF05257(ER)
279808.SH0327(PF00344)(mitochondrial)
279808.SH1440(PF01609) (PF05598)
279808.SH0479(PF01609) (PF05598)
279808.SH2229PF05257(ER)
279808.SH1330(PF01609) (PF05598)
279808.SH0857(PF01609) (PF05598)
279808.SH0455(PF01609) (PF05598)
279808.SH0841(PF01609) (PF05598)
279808.SH0204(PF01609) (PF05598)
279808.SH0952(PF01609) (PF05598)
279808.SH1204(PF01609) (PF05598)
279808.SH1964(PF01609) (PF05598)
279808.SH2619(PF01609) (PF05598)
279808.SH0971(PF01609) (PF05598)
279808.SH0516(PF01609) (PF05598)
279808.SH2428(PF01609) (PF05598)
279808.SH2041(PF01609) (PF05598)
279808.SH1504(PF01609) (PF05598)
279808.SH2073PF01610
279808.SH2448PF01610
279808.SH2282PF01610
279808.SH1049PF01610
279808.SH0755PF05257
279808.SH1081(PF01609)
279808.SH2470PF01610
279808.SH2380(PF00847)
279808.SH1873(PF01609)
279808.SH0721PF01610
279808.SH0423PF05257
279808.SH2469PF01610
279808.SH2267(PF00872)
279808.SH1072PF01610
279808.SH1613(PF00872)
279808.SH1610(PF00872)
279808.SH1100(PF00872)
279808.SH2033(PF00872)
279808.SH0030PF01610
279808.SH0884(PF05598)
279808.SH0885(PF01609)
279808.SH1912PF01610
279808.SH0080PF01610
279808.SH0876PF01610
279808.SH1906(PF00872)
279808.SH0501PF01610
279808.SH2577(PF00872)
279808.SH2574PF02037
279808.SH2575(PF00872)
279808.SH2573(PF00872)
279808.SH1151PF01610
279808.SH2177(PF05598)
279808.SH2178(PF01609)
279808.SH1927PF01610
279808.SH0323PF01610
279808.SH0520PF01610
279808.SH1496(PF00872)
279808.SH1959PF01610
279808.SH0339(PF00872)
279808.SH1005(PF00872)
279808.SH1008(PF00872)
279808.SH0830PF01610
279808.SH2154(PF05495)
279808.SH0945PF01610
279808.SH1252PF01610
279808.SH2620PF01610
279808.SH2621PF01610
279808.SH1091(PF00872)
279808.SH1195PF01610
279808.SH1965PF01610
279808.SH0761PF01610
279808.SH0762PF05257
279808.SH2618(PF01609)
279808.SH1748PF05257
279808.SH2333PF05257
279808.SH2336PF05257
279808.SH0378PF01610
279808.SH1510PF01610
279808.SH1643PF01610
279808.SH2191PF01610
279808.SH0905(PF03630)
279808.SH0345PF01610
279808.SH1439(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================