Effective results for Bartonella quintana str. Toulouse (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 49
- Predicted by EffectiveELD: 2 eukaryotic-like domains, contained in 2 proteins (0 high, 2 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
283165.BQ10560			+		ER
283165.BQ13060			+		(ER)
283165.BQ12990			+		ER
283165.BQ04740			+		ER
283165.BQ01530			+		ER
283165.BQ07970			+		ER
283165.BQ13290			+		ER
283165.BQ11030			+		mitochondrial; (mitochondrial)
283165.BQ02450			+		ER
283165.BQ06580			+		(mitochondrial)
283165.BQ10180			+		(ER)
283165.BQ12080			+		(ER); ER
283165.BQ09510			+		(mitochondrial)
283165.BQ08920			+		(mitochondrial)
283165.BQ11750			+		ER
283165.BQ05750				(PF06455)	ER
283165.BQ12470			+		ER
283165.BQ03160			+		ER
283165.BQ12150			+
283165.BQ08760			+
283165.BQ02470			+
283165.BQ11580			+
283165.BQ05870			+
283165.BQ06610			+
283165.BQ05330				(PF01442)
283165.BQ05500			+
283165.BQ01540			+
283165.BQ07040			+
283165.BQ11720			+
283165.BQ01320			+
283165.BQ08800			+
283165.BQ07520			+
283165.BQ09770			+
283165.BQ10140			+
283165.BQ12130			+
283165.BQ05510			+
283165.BQ03150			+
283165.BQ01020			+
283165.BQ00260			+
283165.BQ04150			+
283165.BQ05680			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.6 (16/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================