Metamenu

Effective results for Bartonella henselae str. Houston-1 (eggnog40)

Summary

Number of putative secreted proteins: 73
- Predicted by T4SEpre: 77
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 17 proteins (0 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
283166.BH13920+(mitochondrial)
283166.BH07150(PF13332)ER
283166.BH09240(PF00959)mitochondrial; (mitochondrial)
283166.BH06670(PF13332)ER
283166.BH07870+(mitochondrial)
283166.BH05250+ER
283166.BH11300+(mitochondrial)
283166.BH06370+ER
283166.BH14350(PF09295)mitochondrial; (mitochondrial)
283166.BH15170+(mitochondrial)
283166.BH04590+ER
283166.BH07220+ER
283166.BH12100+(mitochondrial)
283166.BH15700+ER
283166.BH15550+ER
283166.BH10250+ER
283166.BH12400+(mitochondrial)
283166.BH05690+ER
283166.BH09500+(mitochondrial)
283166.BH16390+ER
283166.BH06550(PF13332)ER
283166.BH13290+ER
283166.BH04140+ER
283166.BH06940+ER
283166.BH01730+ER
283166.BH16160+ER
283166.BH08840(PF06455)ER
283166.BH03740+(PF09588)
283166.BH03360+(mitochondrial)
283166.BH16360+(ER)
283166.BH12850+
283166.BH06920+
283166.BH15880+
283166.BH10740(PF00959)
283166.BH06850(PF09588)
283166.BH15220+
283166.BH03750(PF09588)
283166.BH13940(PF00959)
283166.BH07840+
283166.BH07610+
283166.BH13370+
283166.BH00090+
283166.BH06730+
283166.BH13210+
283166.BH02950(PF00959)
283166.BH03800+
283166.BH13420+
283166.BH03490+
283166.BH02610+
283166.BH07240(PF13332)
283166.BH06750(PF13332)
283166.BH13430+
283166.BH03220+
283166.BH10180+
283166.BH11460+
283166.BH08990(PF00959)
283166.BH00640+
283166.BH06190+
283166.BH13410+
283166.BH10610+
283166.BH12420+
283166.BH14600(PF00959)
283166.BH04130+
283166.BH08720+
283166.BH11720+
283166.BH13440+
283166.BH07410+
283166.BH03660+
283166.BH14450(PF09588)
283166.BH05140+
283166.BH15450+
283166.BH02210+
283166.BH05800+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.4 (14/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================