Effective results for Thermodesulfovibrio yellowstonii DSM 11347 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 29 proteins (8 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
289376.THEYE_A0187(PF01909)mitochondrial
289376.THEYE_A1897PF02950ER
289376.THEYE_A0623(PF07720)ER
289376.THEYE_A0526(PF07998)ER
289376.THEYE_A1462PF03464 PF03465
289376.THEYE_A2049(PF01909)
289376.THEYE_A0514PF04910
289376.THEYE_A1581PF00380
289376.THEYE_A1582PF00572
289376.THEYE_A1690(PF01909)
289376.THEYE_A1682(PF10143)
289376.THEYE_A1946(PF01909)
289376.THEYE_A1573(PF01909)
289376.THEYE_A0357(PF01909)
289376.THEYE_A0431(PF01909)
289376.THEYE_A0519(PF13910)
289376.THEYE_A0689(PF01909)
289376.THEYE_A1183(PF01909)
289376.THEYE_A1633PF00380
289376.THEYE_A1634PF00572
289376.THEYE_A1625(PF01909)
289376.THEYE_A1879(PF02943)
289376.THEYE_A1261(PF10143)
289376.THEYE_A1606(PF02410)
289376.THEYE_A1211(PF01909)
289376.THEYE_A0735PF10539
289376.THEYE_A1085(PF01909)
289376.THEYE_A1809(PF01909)
289376.THEYE_A1658(PF02410)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================