Effective results for Rickettsia canadensis str. McKiel (eggnog40)
Summary
Number of putative secreted proteins: 43
- Predicted by T4SEpre: 41
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 9 proteins (6 high, 3 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
293613.A1E_00205 | + | ER | |||
293613.A1E_02830 | (PF09825) | (mitochondrial) | |||
293613.A1E_05540 | + | ER | |||
293613.A1E_03305 | + | ER | |||
293613.A1E_00515 | + | ER | |||
293613.A1E_00085 | + | ER | |||
293613.A1E_01030 | + | ER | |||
293613.A1E_00505 | + | ER | |||
293613.A1E_03175 | + | ER | |||
293613.A1E_01280 | + | ER | |||
293613.A1E_03400 | + | ER | |||
293613.A1E_00090 | PF02326 | (ER) | |||
293613.A1E_04945 | + | ER | |||
293613.A1E_00625 | + | ER | |||
293613.A1E_04755 | PF03219 | mitochondrial; (mitochondrial) | |||
293613.A1E_03720 | + | ER | |||
293613.A1E_05275 | + | mitochondrial; (mitochondrial) | |||
293613.A1E_00785 | + | ||||
293613.A1E_02585 | + | ||||
293613.A1E_01760 | + | ||||
293613.A1E_00485 | + | ||||
293613.A1E_01500 | + | ||||
293613.A1E_05425 | + | ||||
293613.A1E_01305 | + | ||||
293613.A1E_01860 | + | ||||
293613.A1E_02600 | + | ||||
293613.A1E_03260 | + | ||||
293613.A1E_02370 | PF03219 | ||||
293613.A1E_00250 | PF03219 | ||||
293613.A1E_02960 | + | ||||
293613.A1E_04230 | + | ||||
293613.A1E_03750 | (PF14328) | ||||
293613.A1E_03220 | + | ||||
293613.A1E_02245 | + | ||||
293613.A1E_02925 | + | ||||
293613.A1E_01215 | + | ||||
293613.A1E_01935 | + | ||||
293613.A1E_02910 | PF03219 | ||||
293613.A1E_04050 | + | ||||
293613.A1E_03535 | PF03219 | ||||
293613.A1E_04650 | (PF02902) | ||||
293613.A1E_05395 | + | ||||
293613.A1E_05385 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 1.6 (16/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.6 (16/10 KEGG proteins)