Effective results for Rickettsia canadensis str. McKiel (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 41
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 9 proteins (6 high, 3 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
293613.A1E_00205+ER
293613.A1E_02830(PF09825)(mitochondrial)
293613.A1E_05540+ER
293613.A1E_03305+ER
293613.A1E_00515+ER
293613.A1E_00085+ER
293613.A1E_01030+ER
293613.A1E_00505+ER
293613.A1E_03175+ER
293613.A1E_01280+ER
293613.A1E_03400+ER
293613.A1E_00090PF02326(ER)
293613.A1E_04945+ER
293613.A1E_00625+ER
293613.A1E_04755PF03219mitochondrial; (mitochondrial)
293613.A1E_03720+ER
293613.A1E_05275+mitochondrial; (mitochondrial)
293613.A1E_00785+
293613.A1E_02585+
293613.A1E_01760+
293613.A1E_00485+
293613.A1E_01500+
293613.A1E_05425+
293613.A1E_01305+
293613.A1E_01860+
293613.A1E_02600+
293613.A1E_03260+
293613.A1E_02370PF03219
293613.A1E_00250PF03219
293613.A1E_02960+
293613.A1E_04230+
293613.A1E_03750(PF14328)
293613.A1E_03220+
293613.A1E_02245+
293613.A1E_02925+
293613.A1E_01215+
293613.A1E_01935+
293613.A1E_02910PF03219
293613.A1E_04050+
293613.A1E_03535PF03219
293613.A1E_04650(PF02902)
293613.A1E_05395+
293613.A1E_05385+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.6 (16/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================